Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00867 ATGGCCAATTGCATCATATGTAACTATCCTTTCAAGAACCATTTGCTAGTGTTCATCATCATGATGGTTCTTTCTTTCATCTCCAATGTTCAAGCCCAAGACAGTGACACAGATTCCATGCCAGATTTTCCTCAACCTGTTCATCCAAGCAAGGTGGTTGTGATAGTGTCCCTCTCAATATTGTTCACCTTATCATTTCTCTTACTTGTGTATATAAGGTTCCGCAGCAGAACCACCACCCTCTTGAACTCATCCAAAGAAGTAGCCATCATTCACCAAATTTCCAAGCACCAACTAGATCAAATTCAAGGTCAAGGAGGCTTTCAGGGATTAGACAGACAAGTGATTGAGGCACTCCCATTTTTCAGGTTCTCTTCCCTTAAAGGGTCCAAACAAGGCCTAGAGTGCACGGTTTGCCTGTCACAGTTTGAGGACACTGAGACTCTTAGACTCTTGCCAAAGTGCAAACATGCTTTCCACATGAGTTGCATTGACAAGTGGCTTGAAAGCCACTCTACTTGCCCTCTTTGCAGGAACACCATTGACCCTTTGGACATCAAGAACTTCACCTACTCAATCAGCTCAAGGTCCCTAAGAGTTCCTTCGAATTTAACCGAGGACACTAACCTTGAAATCTTTGTTCACAGGGAACCTTCATCATCAAGGTTTTGGAATTTGGGAAGGAGCAACAAAGAAGAACAACATCTGCTTGATCAAGAGGTTTATGGCAACAAACAAGTGCATAAGTTCAATCACAAAATTGTGGTCTCTGATGTTGTTACATTAAGGAGCAGGTGGAGTGATCTTAACTCCTCAGACATGTTATCATTGAACAGTGAGATGCTTCATGACTTCTCAAGCAGAAGATTCTCTCCCTCTAATGAAACGTTTCGCGGAAATTCAAGCCTTCTTCCCTCTATTTTCAATGAGGATGAAAGTTCATTTACTTTGTTGAATGCTGCTGAGAAGAGATCCATGTCTGAGATTGCTCATGTTCCTAGGTTCATGGAAACGTGCAAGCAGAATAGAATGGAAGCAGGTGTGGCATCAAGTGGGAACAATGAGAGGGAAGAGAGGTTGAGGAGGATTTGGTTGGGAATTGCTCAACGAACAGTGCAATGGTTTGTGGGACAAGAAAGAAACTCAAGAGAATTACAGCACAAACATTTAGCTTCAAATGTTTGA 1185 0.4228 MANCIICNYPFKNHLLVFIIMMVLSFISNVQAQDSDTDSMPDFPQPVHPSKVVVIVSLSILFTLSFLLLVYIRFRSRTTTLLNSSKEVAIIHQISKHQLDQIQGQGGFQGLDRQVIEALPFFRFSSLKGSKQGLECTVCLSQFEDTETLRLLPKCKHAFHMSCIDKWLESHSTCPLCRNTIDPLDIKNFTYSISSRSLRVPSNLTEDTNLEIFVHREPSSSRFWNLGRSNKEEQHLLDQEVYGNKQVHKFNHKIVVSDVVTLRSRWSDLNSSDMLSLNSEMLHDFSSRRFSPSNETFRGNSSLLPSIFNEDESSFTLLNAAEKRSMSEIAHVPRFMETCKQNRMEAGVASSGNNEREERLRRIWLGIAQRTVQWFVGQERNSRELQHKHLASNV 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00867 394 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 31 379 - -
Pumo9g00867 394 SUPERFAMILY RING/U-box 115 184 - -
Pumo9g00867 394 FunFam RING-H2 finger protein ATL43 111 185 - -
Pumo9g00867 394 SMART ring_2 136 177 IPR001841 -
Pumo9g00867 394 CDD RING-H2_EL5-like 135 178 - -
Pumo9g00867 394 ProSiteProfiles Zinc finger RING-type profile. 136 178 IPR001841 -
Pumo9g00867 394 Pfam Ring finger domain 135 178 IPR001841 -
Pumo9g00867 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 184 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00867 Pumo-Chr9 19112343 19113717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00867 49 382 C3H Transcription Factor Family AT2G20030 43.626 4.28e-75 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00867 K10664 - gmx:100803881 571.622