Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00820 ATGGACGGTGAGCAGAGCATGCCTGCTCCACCTCATGAACAAGTTGATGGTGCTCAGAAAGTTAGAGCATTACATGGGAGGACTACTGGCCCTACAAGGCGTTCTACAAAAGGGCAATGGACACCGGAGGAGGATGATATCTTACGGAATGCTGTTGAGAGATTTAAAGGAAAAAATTGGAAAAAAATTGCGGAATGTTTCAAGGATAGAACTGATGTGCAATGCCTACATAGGTGGCAGAAAGTTTTAAATCCTGAACTTGTTAAAGGTCCATGGTCTAAAGAGGAAGATGAAATAATTATTGAATTGGTGAAGAAAAATGGGCCTAAAAAGTGGTCGTCTATTGCACAACATTTACCTGGACGTATTGGTAAGCAATGTCGAGAAAGGTGGGTTAATCATCTTGATCCTACTATAAAAAAGGAAGCATGGACTCAGGAAGAGGAGTTGGCTCTAATACAATATCATCAGATTTTTGGGAACAAATGGGCCGAATTGTCAAAGGTCATTCCTGGAAGGACAGACAATGCTATTAAAAATCACTGGAACAGTTCTGTCAAAAAGAAATTGGATTCTTATTTGGCATCAGGCTTGCTTACTCAATTCGAATCTGTACCTCATGTTGGAAATTTGAATCAACCAACAAGGTTGCAGTGTAGTGGAGATGATAACGGTCCCAAGGGGACTGAAGGAGATGAAGTTTCAGAGTGCAGCCAAGGTTCAGCTAATGCTGTTCGCTTTCCATCTGCTGCAGGAACGAGCAATACTGACTTCCAAACTGGAGAGGCTTATAGGCTAAATGAAGAATGTGGTCTTGGAAAGGATCATAGTCCTCGAGCATCTTGTTCAGAGCCATATTATGTATCAATTGATGATGTTACTATATGCATCCCAGAAACTGCTCACCAAGAGGCTTGCACTTCTCAATTCATTGAGCAACAGTCACATGAACCTGGAAGTTCCATTAGTGGGGATTGCCAGTTCAATTTACATTCCTTGCCCAATATTTCATCAATGGTCTTGGGGCAGGAATCCTTGCAGTTGCAAAGAGATTGTATAGCTCCTAGTGAAATCTGTGACATGGTGAATGTTCCATTTCAGACTTCAATGGAGTTAGGCGTTTCAACATCCATGGGACCTGCATCTATGGATTCTCTTAAACCAGAGCACATGCTGATATCTGATAATGAATGTTGCAGAGTCCTGTTTTCAGACGCAATGAATGATGGATGTTTTTCCCCTGTAGATTATAATAAAGGTGAAGATATGGTTGAATTTTCTGGATGCACTAGCACTTCATATCTTTGTCAATCTTGTAATATCCAGATATCTGAAACTGGTGGAACCTCAACTCTACAGCTAACTTGTCCTCAGTGTTCTAATAATTATAATGGAACTTCATACTCCCAGTCTGTCCCTCCAGTACTTTCTGCTAGTGATGATAGGCTGGGGACTACTGCCAACGGCAATCAATTATTTGGCACGGAGGATCACCAGTTTGTTTCTAGAGCACCTGCTAACTTCACTTATGTCAATGACATATCTAGTTCTCCTTGTGTTGATGGTATAGGTAGTGCAGTAATGGAAGAGCCACATGATATTCTGAAGGGTACTTCAAAATTGGTCCTTGTAAATAGTTTTGGCCGTGGATCAGATGCCAAGCAAACTTGTAATCCAACAGATGAAAAAACAAATGTGCATACAGAAAAGGAGGACTCAGGATCTCTATGTTATGAACCTCCCCGTTTTCCAAGTTTGGATATTCCTTTCTTCAGCTGTGATCTTGTACAATCTGGGAGTGATATGCAGCAAGAGTTTAGTCCCTTGGGTATCCGCCAGTTTATGATGTCTTCTATGAACTGTCTTACTCCTTTTAGGTTGTGGGACTCACCCTCTCGTGATGATAGTCCAGATGCATTGTTAAAAAGTGCAGCTAAAACTTTTACAGGTACACCATCCATATTAAAGAAACGACACCGAGATTTGTTGTCACCGCTCTCAGATAAAAGAGTTGAGAAGAAACTTGAGACTGACATGACATCTACCTTTACCAAAAATTTTTCCAGTTTGGATGTCATGTTTGGTGGCAATGAGACTCGAGAAGCAGATATGCCTTCATATTCATCTTCATTGCAAAAACAGAACAGTAGGGCATCTGTTGATGATGATAATAAAGAAAATTGTGGACAAGCTTATAAAGGGGAACAAGTAATGGAGCCAATTAAATCTGCAATTTTGGATGAAAAGAACTCTCAAAAAGATACTGTTGACAGTAATTCTCAGCATAATGTCAAGCAACAACCTCTTGATTCTAAAATGAAGATTGATGCAGCTGCTGAGATTGAGCAACAACCTTCTGGAGTTTTGGTTGAACATGATGTGAATGACCTGTCACTGTCTTCTCCTGATCAAGTTGGTTTAAAATCAGACAGAGGTCCAGGTTCAAGTGCTAAAACTCCTAAAAGCTTGAACAAGTCTTTGGAAGCAGCTCCAAATCAGAGCGGCCATTTGAAATTATCTTCTAAAAATCCATGCTCAAGGGTTAATTCTTGTTCTCCTTGTGTTCGTGCAAAGGAGCATGAAGGACTTTCAGTTGCTGTTACTCGTGCACAAGCTCCAGGGGACAATTCGGGGGAACAAACCAGAAAAGATGGTGGTTTTGAAACATGTAGCATCTTTGGTGGAACACCTTTTAGGAAAAGCCTTGAATCACCTTCTGCATGGAAATCCCCTTGGTTCTTCAACACTTTTCTATCTAGCCCCAGACTTGATACTGAAATTACAATTGAGGATTTTGGGTATTTAATGAGCCCAGGTGATAGAAGCTATGATGCAATCGGGTTGTTGAAAGAGATCAGTGAACAAACTGCTGCCACATATGCCAATGCTCAGGAGGTTTTAGGAAATGAAACTCCTAAGGCGTTACCAAAAGATGCATCCGAAAATGACAAGGATAGGGACCATGAAAATAATGATCCTGCCAATCAGCCTGGGAACCGTTCTCAGTTGGCTTCAAATGCTTTGATAGAGCGACGCACACTTGACTTCAGTGAATGTGAAACACCAGGCAAGGATGATAACAGCAAATCCTCACCTATGAGCTTCTCAAGCCCTTCTTCGTATTTGATGAAAGGTTGTAGATGA 3144 0.4103 MDGEQSMPAPPHEQVDGAQKVRALHGRTTGPTRRSTKGQWTPEEDDILRNAVERFKGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDEIIIELVKKNGPKKWSSIAQHLPGRIGKQCRERWVNHLDPTIKKEAWTQEEELALIQYHQIFGNKWAELSKVIPGRTDNAIKNHWNSSVKKKLDSYLASGLLTQFESVPHVGNLNQPTRLQCSGDDNGPKGTEGDEVSECSQGSANAVRFPSAAGTSNTDFQTGEAYRLNEECGLGKDHSPRASCSEPYYVSIDDVTICIPETAHQEACTSQFIEQQSHEPGSSISGDCQFNLHSLPNISSMVLGQESLQLQRDCIAPSEICDMVNVPFQTSMELGVSTSMGPASMDSLKPEHMLISDNECCRVLFSDAMNDGCFSPVDYNKGEDMVEFSGCTSTSYLCQSCNIQISETGGTSTLQLTCPQCSNNYNGTSYSQSVPPVLSASDDRLGTTANGNQLFGTEDHQFVSRAPANFTYVNDISSSPCVDGIGSAVMEEPHDILKGTSKLVLVNSFGRGSDAKQTCNPTDEKTNVHTEKEDSGSLCYEPPRFPSLDIPFFSCDLVQSGSDMQQEFSPLGIRQFMMSSMNCLTPFRLWDSPSRDDSPDALLKSAAKTFTGTPSILKKRHRDLLSPLSDKRVEKKLETDMTSTFTKNFSSLDVMFGGNETREADMPSYSSSLQKQNSRASVDDDNKENCGQAYKGEQVMEPIKSAILDEKNSQKDTVDSNSQHNVKQQPLDSKMKIDAAAEIEQQPSGVLVEHDVNDLSLSSPDQVGLKSDRGPGSSAKTPKSLNKSLEAAPNQSGHLKLSSKNPCSRVNSCSPCVRAKEHEGLSVAVTRAQAPGDNSGEQTRKDGGFETCSIFGGTPFRKSLESPSAWKSPWFFNTFLSSPRLDTEITIEDFGYLMSPGDRSYDAIGLLKEISEQTAATYANAQEVLGNETPKALPKDASENDKDRDHENNDPANQPGNRSQLASNALIERRTLDFSECETPGKDDNSKSSPMSFSSPSSYLMKGCR 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00820 1047 CDD SANT 91 135 IPR001005 -
Pumo9g00820 1047 Pfam Myb-like DNA-binding domain 89 135 IPR001005 -
Pumo9g00820 1047 Pfam Myb-like DNA-binding domain 141 183 IPR001005 -
Pumo9g00820 1047 Pfam Myb-like DNA-binding domain 37 83 IPR001005 -
Pumo9g00820 1047 MobiDBLite consensus disorder prediction 815 850 - -
Pumo9g00820 1047 MobiDBLite consensus disorder prediction 994 1008 - -
Pumo9g00820 1047 FunFam Transcription factor MYB3R-2 142 204 - -
Pumo9g00820 1047 MobiDBLite consensus disorder prediction 698 736 - -
Pumo9g00820 1047 Gene3D - 36 88 - -
Pumo9g00820 1047 MobiDBLite consensus disorder prediction 964 1047 - -
Pumo9g00820 1047 MobiDBLite consensus disorder prediction 750 770 - -
Pumo9g00820 1047 Gene3D - 142 201 - -
Pumo9g00820 1047 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 139 IPR017930 -
Pumo9g00820 1047 MobiDBLite consensus disorder prediction 702 717 - -
Pumo9g00820 1047 MobiDBLite consensus disorder prediction 867 888 - -
Pumo9g00820 1047 MobiDBLite consensus disorder prediction 976 993 - -
Pumo9g00820 1047 MobiDBLite consensus disorder prediction 1 42 - -
Pumo9g00820 1047 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 190 IPR017930 -
Pumo9g00820 1047 SUPERFAMILY Homeodomain-like 86 182 IPR009057 -
Pumo9g00820 1047 Gene3D - 89 140 - -
Pumo9g00820 1047 MobiDBLite consensus disorder prediction 799 851 - -
Pumo9g00820 1047 ProSiteProfiles Myb-like domain profile. 84 135 IPR001005 -
Pumo9g00820 1047 PANTHER MYB PROTEIN-RELATED 37 110 - -
Pumo9g00820 1047 CDD SANT 40 83 IPR001005 -
Pumo9g00820 1047 SUPERFAMILY Homeodomain-like 38 93 IPR009057 -
Pumo9g00820 1047 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 83 IPR017930 -
Pumo9g00820 1047 ProSiteProfiles Myb-like domain profile. 136 186 IPR001005 -
Pumo9g00820 1047 MobiDBLite consensus disorder prediction 1026 1041 - -
Pumo9g00820 1047 SMART sant 36 85 IPR001005 -
Pumo9g00820 1047 SMART sant 88 137 IPR001005 -
Pumo9g00820 1047 SMART sant 140 188 IPR001005 -
Pumo9g00820 1047 MobiDBLite consensus disorder prediction 213 240 - -
Pumo9g00820 1047 CDD SANT 143 183 IPR001005 -
Pumo9g00820 1047 FunFam Transcriptional activator Myb isoform A 36 88 - -
Pumo9g00820 1047 ProSiteProfiles Myb-like domain profile. 32 83 IPR001005 -
Pumo9g00820 1047 FunFam Transcriptional activator Myb isoform A 89 141 - -
Pumo9g00820 1047 MobiDBLite consensus disorder prediction 552 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00820 Pumo-Chr9 16613348 16622272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00820 1 1047 MYB Transcription Factor Family AT4G32730 43.937 0.0 702
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo9g00820 Myb_DNA-binding 9.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00820 - K09420 gmx:100794559 1862.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00820 9 16613348 16622272 Pumo9g00820 9 16613348 16622272 ECH