Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00792 ATGCAAAAGGACAAGGAAGTTGTTACCAAAGAGGGTAAGGATATTGAAATGGAAGAGACTCATGAGAAGGAGGAAACCCTACCACCAGGATTTCGGTTTCATCCCACCGATGAAGAACTCATCTCTTACTATCTCACAAACAAGATTTCAGATTCTAGTTTTACAGGCAAAGCAATAGGTGATGTAGATCTCAACAAATGTGAGCCATGGGAGCTTCCGGCAAAGGCAAAGATGGGGCAAAAAGAATGGTACTTCTTCAATCTAAGAGATCGTAAGTACCCCACGGGTGTGAGAACCAACAGAGCAACGAACACTGGGTACTGGAAAACCACAGGGAAAGACAAGGAGATCCTCAACAGTGCTTCATCGGAGTTGGTTGGTATGAAGAAGACTTTGGTTTTCTACAAAGGAAGGGCTCCCAGAGGAGAGAAATCCAACTGGGTCATGCATGAATACCGCATTCATTCAAAATCCAGCTTCAGAACCAACAAGCAGGATGAATGGGTGGTTTGCCGAGTATTCCGCAAGAGTGCTGGCGCAAAAAAGTTCCCCTCTTCCAACCACACCAGAGCAGTGAATCCTTTTAGTCTGGATGTTGGCCCTAGCATTGTGCCACCACCAATGATGCACCACCAGCTGGGAGACCCTGCAGCTGCTGCTCATTTCCTTTATGGAAGAAACTACATGATGAGCCCTTCAGAGGTAGCTGAACTGACAAGGGTCTTGAGGGATGGTGGGTCCACCAGTGTGAATGTGATGAGCCTACCAATGCAGTACTCTCATTTGAACAACCCAATAGCAGCAGCAGCAGCAGCAGGAGGAGGGCTTACCATTTCTGGCCTTAATTTGAATCTGGGGGGAGGAACAGTTGCTACTACCACCACACAAGCACAACCCCTTTTGAGGCCAATGATGCCACCACCTCAGCCACCTCCTGCTCACACAATGGCCCAAGTGCATCATGACTTCAGTTCCAACATGGTGACACCCAATATTGCTCTTGCTGCTGACAGTGTAGGGTATGGTGCAGACATGGCCAGTGCAAATTCTCATGGAAATAGTGTTTTATCATACGGTCGGATGAGAGTGCTTAGTAATATTATGATGAAGGGATCTTGA 1119 0.4718 MQKDKEVVTKEGKDIEMEETHEKEETLPPGFRFHPTDEELISYYLTNKISDSSFTGKAIGDVDLNKCEPWELPAKAKMGQKEWYFFNLRDRKYPTGVRTNRATNTGYWKTTGKDKEILNSASSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSSFRTNKQDEWVVCRVFRKSAGAKKFPSSNHTRAVNPFSLDVGPSIVPPPMMHHQLGDPAAAAHFLYGRNYMMSPSEVAELTRVLRDGGSTSVNVMSLPMQYSHLNNPIAAAAAAGGGLTISGLNLNLGGGTVATTTTQAQPLLRPMMPPPQPPPAHTMAQVHHDFSSNMVTPNIALAADSVGYGADMASANSHGNSVLSYGRMRVLSNIMMKGS 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00792 372 FunFam NAC domain-containing protein 100-like 36 180 - -
Pumo9g00792 372 Pfam No apical meristem (NAM) protein 28 154 IPR003441 GO:0003677|GO:0006355
Pumo9g00792 372 Gene3D NAC domain 36 180 IPR036093 GO:0003677|GO:0006355
Pumo9g00792 372 ProSiteProfiles NAC domain profile. 27 176 IPR003441 GO:0003677|GO:0006355
Pumo9g00792 372 SUPERFAMILY NAC domain 23 176 IPR036093 GO:0003677|GO:0006355
Pumo9g00792 372 MobiDBLite consensus disorder prediction 1 30 - -
Pumo9g00792 372 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 24 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00792 Pumo-Chr9 15831811 15835669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00792 19 319 NAC Transcription Factor Family AT2G24430 52.778 2.32e-107 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo9g00792 NAM 9.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00792 - - gmx:100811175 566.614