Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00765 ATGGTTTTTCCCCTCAGTGGTCATTTGTATCCATTGCTTCCCTCTATGGACTCCACATTAGAATTGGATGATGTTATTGTTCATCATGATGCTTCGAATCTTCCAAGTATGCATAAGGAGGACGAGACAACACGCAAGGATGACTACATCGAGGGAGTTGAGATAAATTCTACCGATTATAAGTCCACATCTAAGGAGCACCAACACTACACCGTTTTGAGCGAATCTGACATTAAAACGACATCAAGACGCAAACATCAACCAGTTTCTGCTTGCCTTTTGCTCATCCACCATGAGTGGAGTGTGCTCAAAGTGCACGAAGTATGGTTCGATGATGAAGAAAGAGTTCGCAAAGCAGTAGGGTTGCTAAAGCAACATAAACCCCAGGTAGGTTTTCCCAACTCAAAAACCCTCACTTGTGAGATATGTTTCGATGTTGTTTCATGCGATAAGGTTAGATCAGCTGGTTGTGGTCATCTATATTGCATCCTTTGCTGGAAGAAGTACGTGGATACAAGCATCAACGAGGGCCCTGATAAGTGCTTGAAACTTAGACGCCCTCAACCCTCTTGTGATTCAACTGTGGGTGGAGACATGATTTGCGAACTTGCAAGTGAGTCAAAGAGGAACAAGTACGATCGGTATCTATTCCGATCTTATGTGGAAAACAACAAGAAGGTGAAGTGGTGTCCTGCCCCAGATTATGAGTATGCTGTGAGTTATGAACCATATGGTGTTAGAACTAATTCAGATGTTACCTGTCTTTGTTATCACTCCTTTTGTTGGAGTTGTGGGGAAGAAGCTCATAGCCCTGTGGATTGTGAAACCGCGAAACACTGGGTCATGAAGAATGATTCTGATGAATCATCTAAGAACACTGCTTGGATTCTTGCTAATACCAAATCTTGTCCTAAGTGCAAGAAACCCATTCAGAAAATCGATGGGTACGTGCACATGGAATGCAATTGTGGGTTCCAATTTTGTTGGTTATGTCTTCGTGAATGGTCTAACTGCTGTTACAACTGTATCCATTTTCCTAACAAGGATATTTATAAGAAGGAAGTGAAGAGAAATGTGGCGAGTGATTATTTGGAGGATTACACTCACTGTTATGAGGGTTGGGTCAACAATGATTTGTCAAGAAAAAATGGACTTAAGCACCTAATGTACCTGATGAATGGTGGGCATACAAAGAGACTGAGTATGTTATATCGAAGGTCAGAAGATGATTTTGAGTTCATAGAGGAAGCGTGGCAACAAGTGGTCGAGTCTATAAGAGTACTCAAATGGACTCATCCATATGGATTTTATCTCCCTCGGAGTGAACAAGCTAAAAGGGAGTTTCTTGAGTACTCACAACGCGAGGTTGAAGCTATTTTGGAAAAGCTTTGTCATTGTGCAAATAAGGAACTAGGCGAGTTTCTTGATGCTGATAAGCCAAAAGAGACATTTGATCATTTTAGTTGGAATTTAATGGAACTTACCCGTGTCACCAAGGCTTATTTTAAGATAAAACCTTAG 1521 0.4129 MVFPLSGHLYPLLPSMDSTLELDDVIVHHDASNLPSMHKEDETTRKDDYIEGVEINSTDYKSTSKEHQHYTVLSESDIKTTSRRKHQPVSACLLLIHHEWSVLKVHEVWFDDEERVRKAVGLLKQHKPQVGFPNSKTLTCEICFDVVSCDKVRSAGCGHLYCILCWKKYVDTSINEGPDKCLKLRRPQPSCDSTVGGDMICELASESKRNKYDRYLFRSYVENNKKVKWCPAPDYEYAVSYEPYGVRTNSDVTCLCYHSFCWSCGEEAHSPVDCETAKHWVMKNDSDESSKNTAWILANTKSCPKCKKPIQKIDGYVHMECNCGFQFCWLCLREWSNCCYNCIHFPNKDIYKKEVKRNVASDYLEDYTHCYEGWVNNDLSRKNGLKHLMYLMNGGHTKRLSMLYRRSEDDFEFIEEAWQQVVESIRVLKWTHPYGFYLPRSEQAKREFLEYSQREVEAILEKLCHCANKELGEFLDADKPKETFDHFSWNLMELTRVTKAYFKIKP 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00765 506 FunFam RBR-type E3 ubiquitin transferase 134 224 - -
Pumo9g00765 506 Gene3D - 270 503 - -
Pumo9g00765 506 SUPERFAMILY RING/U-box 134 219 - -
Pumo9g00765 506 SUPERFAMILY RING/U-box 290 345 - -
Pumo9g00765 506 FunFam RBR-type E3 ubiquitin transferase 271 504 - -
Pumo9g00765 506 SMART ibrneu5 210 274 IPR002867 GO:0008270
Pumo9g00765 506 SMART ibrneu5 288 342 IPR002867 GO:0008270
Pumo9g00765 506 SUPERFAMILY RING/U-box 211 281 - -
Pumo9g00765 506 CDD BRcat_RBR_ANKIB1 218 283 - -
Pumo9g00765 506 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 224 IPR013083 -
Pumo9g00765 506 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
Pumo9g00765 506 Pfam IBR domain, a half RING-finger domain 210 274 IPR002867 GO:0008270
Pumo9g00765 506 Pfam IBR domain, a half RING-finger domain 298 342 IPR002867 GO:0008270
Pumo9g00765 506 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 62 431 IPR031127 GO:0004842|GO:0016567
Pumo9g00765 506 ProSiteProfiles TRIAD supradomain profile. 136 350 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00765 Pumo-Chr9 15007634 15009182 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00765 65 503 ARIADNE family AT1G65430 46.304 1.60e-129 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00765 K11968 - gmx:100801350 775.778