Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00760 ATGTCTCGCGTGTATGTTGGTAACTTGGATTCACGAGTCACCGAGAGAGATCTCGAAGACGAATTCCGTGTTTTCGGAGTTATTCGGAGTGTTTGGGTTGCACGTAGACCACCTGGTTATGCTTTTATTGACTTTGATGACCGCAGAGATGCACAGGATGCTATCCGTGAATTGGATGGCAAGAATGGTTGGAGAGTTGAGCTTTCTCACAACTCTAGAGGTGGAGGTGGTGGCCGTGGTCGCTCTGGTGGTTCTGATTTGAAATGTTACGAGTGCGGTGAACCCGGTCACTTTGCACGTGAATGTCGCTTGCGTGGTGGTTCAGGAAGACGCCGTAGCCGTAGTCCACCCCGATTCCGTAGAAGCCCAAGTTATGGACGAAGTCCTCGTGGGCGGTCCCCTAGGCGCCGCAGTTTGTCACCTCGTGGACGTAGCTACAGCAGGTCACCTCCTTATCGTGGGCGTGAGGAGGTTCCATATGCTAATGGAAATGGCCTTAGGGAACGACGCAGAAGCAGAAGTTGA 525 0.5238 MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSRGGGGGRGRSGGSDLKCYECGEPGHFARECRLRGGSGRRRSRSPPRFRRSPSYGRSPRGRSPRRRSLSPRGRSYSRSPPYRGREEVPYANGNGLRERRRSRS 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00760 174 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 154 - -
Pumo9g00760 174 SMART rrm1_1 3 69 IPR000504 GO:0003723
Pumo9g00760 174 SMART c2hcfinal6 88 104 IPR001878 GO:0003676|GO:0008270
Pumo9g00760 174 CDD RRM_SRSF3_like 3 71 - -
Pumo9g00760 174 FunFam Serine/arginine-rich splicing factor 7 2 69 - -
Pumo9g00760 174 MobiDBLite consensus disorder prediction 101 174 - -
Pumo9g00760 174 SUPERFAMILY Retrovirus zinc finger-like domains 81 104 IPR036875 GO:0003676|GO:0008270
Pumo9g00760 174 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Pumo9g00760 174 Gene3D - 2 69 IPR012677 -
Pumo9g00760 174 MobiDBLite consensus disorder prediction 66 87 - -
Pumo9g00760 174 Gene3D - 77 138 - -
Pumo9g00760 174 FunFam Serine/arginine-rich splicing factor RSZ22A 85 142 - -
Pumo9g00760 174 ProSiteProfiles Zinc finger CCHC-type profile. 88 103 IPR001878 GO:0003676|GO:0008270
Pumo9g00760 174 SUPERFAMILY RNA-binding domain, RBD 3 83 IPR035979 GO:0003676
Pumo9g00760 174 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Pumo9g00760 174 Coils Coil 169 174 - -
Pumo9g00760 174 Pfam Zinc knuckle 88 103 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00760 Pumo-Chr9 14791289 14796014 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00760 4 84 Eukaryotic Initiation Factors Gene Family AT1G71770 34.483 3.53e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00760 K12896 - gmx:100796961 244.202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00760 9 14791289 14796014 Pumo9g00760 9 14791289 14796014 ECH