Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00745 ATGATTTTCTCTAATTTCATGCCCCTGAATTGTCTTCAATTATCTGATTACTACTATGTCATGTCATTGTGTTGCGAATTTGAAGGTAATAAACAATTGATGGATGAGTATTCTGGTAAAAGAGGTGTAGATGGGATGGTATTCCCTAGAAAGGGGATGAGCCAGGTATTTAGAGATACTGCTAATACTAGAGATCGAAACGGTCAAATTTGTAGCCGATTGGGTTGCAGTAGTAGAGCAAATATTCCCAAAGTTGCTCAAGTCAGATCTTCTGAAAAAGGTAAATCTTTGAGGCCTTCATTCCAGTCCCCTTCAAGTAGCAAGGAAGCAGTTGGAAGCTCCTCTAGAACTACTAGTAACCCAGCAAAACGACTTATAGAACCTCGGAAAACATTATCCTCTCAGTTTGAGACAGATTCATCTAAAACTAGTAGTGTACAGGATGAACCAGAATTTTCAGAGCAAATACCTCCAACAGAAGAAATTCGGAGAGGGCCTCAAGCTGAAGGGGAAGTTACAGAGTCTAGTAATGCGATATTGATGGAAGTAGGAAGCTCCAGTGCAGTATCAAATACTAGATCTCAAAGGAATTTAAATCAAAGATCTGGATTGCGTGGGCAAGAAATTAAAAGCACTGGTCCAGTGAGACGTGCTGTTTCCAGTAGGTATGGATTGAGGAACCTCAGATGCAACTTTATATCTGACGTCATCCCAGCTGGTTGTTCATCATCTGATTCAAGCCTTAATAGAAGGAATGATACAATAAAGAAGGGAAACTGTGAAGGGGGAAGTAGTTCCACTGTTAGAGGGAAAAATATCACTGGGTCTTCACTGGAAGGACGGAATTCTGGCTCCAGAAATGGCATATCTATATCCGATTCAAGAAGATCTAGAAATATTCCTTCTCACCGGAACACCAGCGTAGCATCAGTAAGAACTCAAAGATCAATTAGTGGTCAAGCCAGGGGAAGGTTTACTAGCCAAGGAAATGAAAACCCTGTGGCAACCAGTGAGTCCCCTGTTATCGTTCCCCTTTCACCTCATTCTGGTGATCTTGATGCTCCTGGCTTTTCATATCATACTTCTATGGAGACTCCTTTAAGCGGCTCAAGCTCTTATGGTAGACCAGGCAATAGCAGTGAGCAGTTATGTGGTGTTATGCCTGCGTCTCCTGCAGAAGATGACATCACTCATTCTCTAATAAATCGGGAAAGCTTTCGACATTACAATATGGGTGGTATTGCAGAGGTATTATTGGCACTTGAGAGGATTGAACAAGATGCAGAGCTAACCCATGAGCAAATTATTTTGTTGGAGACAAACTTGTTCCTCAATGGATTAAACTTTTATGATCACCACAGAGACATGCGGTTGGATATTGATAACATGTCCTATGAGGAACTTTTAGCTCTAGAAGAGAGGATGGGAACTGTGAGCACAGCTCTACCGGAGGAAGCACTTGCAGAATGCCTTAAAAGAAGTATATATCAGTCTGCACCTTCAGATGATGCAGATGAGAGTTGTAATGAGGATAAGGATGATATCAAATGCTGCATTTGCCAGGAGGAATATGTTGTTGGAGATGAAGTTGGGGGTCTGCAATGTGAGCATAGATTTCATGTGGTTTGCATACAGGAGTGGCTGCGGCTGAAGAACTGGTGCCCTATTTGTAAAATATCTGCAGCACTGTCCAATTCATCTTCACCTCATTGA 1713 0.4186 MIFSNFMPLNCLQLSDYYYVMSLCCEFEGNKQLMDEYSGKRGVDGMVFPRKGMSQVFRDTANTRDRNGQICSRLGCSSRANIPKVAQVRSSEKGKSLRPSFQSPSSSKEAVGSSSRTTSNPAKRLIEPRKTLSSQFETDSSKTSSVQDEPEFSEQIPPTEEIRRGPQAEGEVTESSNAILMEVGSSSAVSNTRSQRNLNQRSGLRGQEIKSTGPVRRAVSSRYGLRNLRCNFISDVIPAGCSSSDSSLNRRNDTIKKGNCEGGSSSTVRGKNITGSSLEGRNSGSRNGISISDSRRSRNIPSHRNTSVASVRTQRSISGQARGRFTSQGNENPVATSESPVIVPLSPHSGDLDAPGFSYHTSMETPLSGSSSYGRPGNSSEQLCGVMPASPAEDDITHSLINRESFRHYNMGGIAEVLLALERIEQDAELTHEQIILLETNLFLNGLNFYDHHRDMRLDIDNMSYEELLALEERMGTVSTALPEEALAECLKRSIYQSAPSDDADESCNEDKDDIKCCICQEEYVVGDEVGGLQCEHRFHVVCIQEWLRLKNWCPICKISAALSNSSSPH 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00745 570 MobiDBLite consensus disorder prediction 258 343 - -
Pumo9g00745 570 MobiDBLite consensus disorder prediction 361 381 - -
Pumo9g00745 570 SMART ring_2 517 557 IPR001841 -
Pumo9g00745 570 MobiDBLite consensus disorder prediction 93 124 - -
Pumo9g00745 570 SUPERFAMILY RING/U-box 511 561 - -
Pumo9g00745 570 FunFam E3 ubiquitin-protein ligase arkadia 479 563 - -
Pumo9g00745 570 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 99 561 IPR045191 GO:0061630
Pumo9g00745 570 MobiDBLite consensus disorder prediction 185 207 - -
Pumo9g00745 570 Pfam Ring finger domain 516 558 IPR001841 -
Pumo9g00745 570 MobiDBLite consensus disorder prediction 241 381 - -
Pumo9g00745 570 Coils Coil 421 441 - -
Pumo9g00745 570 MobiDBLite consensus disorder prediction 85 173 - -
Pumo9g00745 570 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 482 562 IPR013083 -
Pumo9g00745 570 MobiDBLite consensus disorder prediction 185 215 - -
Pumo9g00745 570 ProSiteProfiles Zinc finger RING-type profile. 517 558 IPR001841 -
Pumo9g00745 570 MobiDBLite consensus disorder prediction 131 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00745 Pumo-Chr9 14486064 14492740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00745 414 561 C3H Transcription Factor Family AT2G15530 42.568 1.04e-34 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00745 - - gmx:100812055 931.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00745 9 14486064 14492740 Pumo9g00745 9 14486064 14492740 ECH