Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00702 ATGGGAGAGGTGGCAGTAATGCACTCTGAGCCTCTGCAGTTTGAGTGCAATGACATTAGTATGAATATGACTGAGAAGGAAGTGTATCCTCCAGAATCAAATGTGGAGCACTTGCCTGGAGAAGAATCAAGTCAATCAACAGACCACAAAAATATCAATGACTTGCGAGAGAAAGGATATATGGAGTATGGATGTCAACATTACCGGAGAAGATGCCGTATCAGGGCCCCTTGTTGCAATGAGATTTTTGATTGCCGCCATTGTCACAATGAGGCAAAAAATGATATCAAAATTGATCAGAAGCATAGACATGACATTCCACGACACCAAGTCAAACAGGTGATTTGTTCACTTTGTGGGACCGAACAAGATGTTCAGCAAAACTGTATAAATTGCGGTGTTTGTATGGGAAAGTACTTCTGTGGAACATGCAAGCTTTTTGATGATGATATATCTAAGCAGCAGTACCATTGCAGTGGCTGTGGAATTTGCAGAACTGGAGGAAGCGAAAATTTCTTCCATTGCTACAAGTGTGGTTGTTGCTACTCAACTCTGCTGAAAAACGGTCACCCTTGTGTAGAAGGAGCAATGCATCATGATTGCCCTGTTTGTTTTGAGTATTTGTTTGAATCAAGAAATGATGTCACCGTTATGCCATGTGGACATACAATCCATAAGAGCTGCCTGAATGAAATGAGAGAACATTTCCAGTATGCGTGCCCTCTCTGCTCGAAGTCAGTCTGTGACATGTCAAAGGTTTGGGAGAAATTTGACATAGAAATTGCTGCTACACCAATGCCTGAGCAATACCAAAATAAAATGGTTTGGATCCTGTGCAATGATTGTGGTAAAACTTCTCACGTTCAGTTCCATTTTGTGGCTCAAAAGTGCCCGAACTGCAAATCCTACAACACACGACAAACATGA 927 0.4175 MGEVAVMHSEPLQFECNDISMNMTEKEVYPPESNVEHLPGEESSQSTDHKNINDLREKGYMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAKNDIKIDQKHRHDIPRHQVKQVICSLCGTEQDVQQNCINCGVCMGKYFCGTCKLFDDDISKQQYHCSGCGICRTGGSENFFHCYKCGCCYSTLLKNGHPCVEGAMHHDCPVCFEYLFESRNDVTVMPCGHTIHKSCLNEMREHFQYACPLCSKSVCDMSKVWEKFDIEIAATPMPEQYQNKMVWILCNDCGKTSHVQFHFVAQKCPNCKSYNTRQT 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00702 308 SUPERFAMILY RING/U-box 200 249 - -
Pumo9g00702 308 Pfam Ring finger domain 200 243 IPR001841 -
Pumo9g00702 308 Pfam CHY zinc finger 65 146 IPR008913 GO:0008270
Pumo9g00702 308 CDD RING-H2_Pirh2-like 200 244 - -
Pumo9g00702 308 SMART ring_2 201 243 IPR001841 -
Pumo9g00702 308 SUPERFAMILY CHY zinc finger-like 62 136 IPR037274 GO:0008270
Pumo9g00702 308 Gene3D - 272 308 - -
Pumo9g00702 308 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 17 308 - -
Pumo9g00702 308 MobiDBLite consensus disorder prediction 28 52 - -
Pumo9g00702 308 ProSiteProfiles Zinc finger RING-type profile. 201 244 IPR001841 -
Pumo9g00702 308 SUPERFAMILY Zinc hairpin stack 137 194 IPR037275 -
Pumo9g00702 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 246 IPR013083 -
Pumo9g00702 308 Pfam Zinc-ribbon 248 306 IPR039512 -
Pumo9g00702 308 ProSiteProfiles Zinc finger CTCHY-type profile. 136 200 IPR017921 -
Pumo9g00702 308 ProSiteProfiles Zinc finger CHY-type profile. 58 134 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00702 Pumo-Chr9 13857095 13860642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00702 63 306 C2H2 Transcription Factor Family AT3G18290 39.600 3.81e-54 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00702 K10144 - gmx:100803569 675.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00702 9 13857095 13860642 Pumo10g00015 10 689872 697859 PCT