LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo9g00695	ATGGGAAATCGGAAGACAGAAGAGGAAAGGATTGAAAGAGTAATTCGGAGTCTTTTAAAACTTCCCGAAAATCGAAGATGCATCAACTGCAATCTTTTGGGACCACAATATGTGTGTACAACTTTCTCCACATTTGTCTGCACAAATTGCAGTGGGATACACCGAGAGTTTACGCATAGAGTAAAATCTGTGTCAATGGCTAAATTTACTCCAGAAGAAGTCACTGCCCTTCAAGCAGGTGGCAATGAGAGAGCAAAGCAGATTTATTTTAAAGAATGGGATCCCCTGCGCCATTCTAACCCTGATTCCTGTAATATACACAAACTTCGAGATTTCATTAAGCATGTCTATGTGGAAAGAAGATATACTGGTGAAAGTAGTAGTAGCAGTCTTCCTAGGATTAGAATGAGTGAGAAGGAGGAGTCTTATGCAAGTAAGAAAAGTAGTTCATTTCGTTTTGAAATCATAAGTCCTCATTCAAGTCCTGGTCCAAAAAGTGATGACAAGAATCTCAGATATTTATATGATGAAAGCAGAAGTCCTAGATATACACAGAAGTATTCAAGGCATGGCGGCCACTCCAGAAGTCCTATAAAAATTGAAGTTGTCGATGACAGGTTCCGAGACGAAGAACGTAGAAATCGCAGGCTTTCAAATATAGAATCAAAGCTAAAACAAATTTCAATTGATGGTCAGAAGAATGTAGACAAATCCCAACTCCCTGTTGCACGTCCTTCGGGAGAAATATTAAGGGAGAAGGCTCCATCTGTACAAGTCACACATTCTGGTGGCAAGGGTTCTGTTGAGGAAAATCCATCTGAACGAAAAAATAATAATCCAGAGAGCTCCACTGATTTGAGAACTAAGTCTCAGGCTACTCATTCTAGTGCTGGAGGTGGACCAGAATCACCACATATAACACAATCAAATGAAAATAACTGGGCCATATTTGGACCTTCAACAGAGAACAATGATCCTAAAACTCCAAACACAGATACCTCGAAACCTTCTAAGACAAAGGCAGCATCTGAAGCAGCAACACCTCCAAAAAATCCTCTAGACCTTTTACTTTTCGAATTGTCAGGCCCTGTAACTCCAGTTACCGGTGGCATGTCACAAGCCCCAAGTGGTACTAATAATGATTCAACAACTACAACAGCAGAAAATGCCAATACTTGGGACTTTCCATCTAATTCAGTGGGGAAGACAACTGCATCACCCAACAATACTAGTGTTTGGTCATTTACATCAACCCCAGCCACTGAGTCAGCACAACCTTCTAATGAAGTTCCTCCACATACTGAAGTTTCACATGCACATGAACCATCAAGCATGCAATATCTTCCGTCCGTATTGACAGGTCGTAGTTCAACCACACAACCAACAAATTCACCAGTCAAAGATATAGCTTCAAATAATCAGTCATCAGCAGCTCCTAGTACAAATGACTCTTCATGGGGTTTTACTAAACTATCTTCTCAAACTACCTCAAAACCTACTCAAGAAACCAGACCTGGTGTTGGCTCCCAGCCCAGTAAAGTGGAAACAAAGTCTAGTGGAAGAATGGAACTTCCAGAGGACCTTTTTACATCAAGCTACTTATCTGGCCCTGCACCACTTGCAGGTTGGCAGAATGTTCAACCTCATGGCATGGGATATGGCATGCAGTATTATCATAATGCAGTGCCTCCCTCAGCCCTTCCAAATGCACCAAAGTCCTCAAACCCCTTTGATGTAACTGATGGGAGAAGTTTAATCCATGCCTCATCGCTTCCTACTATGGCATCTTTGCACAGCGTACCACCCGCTGTATCACCCAGAACAGGATTAATGCATGCTTCAAGCCTTGGGTCTTTATCTCAGTCCCCATGTTATGCATCTCCAGTTCCAATGGGTGGGTACCAAGTTAATAATAAGGAGCAACCCACAAGACCACAAAGAACTGATAGCTTCAACAGTGAGTTTTCTGCTTTTGGATCTCTAGACCCCACTCAGCAGTCAAATAGGGGACTCAACACCTCCAAAACTGCAAATTCTTCTTCCAATACAAGAAGAAACCCATTTGACTAG	2070	0.4203	MGNRKTEEERIERVIRSLLKLPENRRCINCNLLGPQYVCTTFSTFVCTNCSGIHREFTHRVKSVSMAKFTPEEVTALQAGGNERAKQIYFKEWDPLRHSNPDSCNIHKLRDFIKHVYVERRYTGESSSSSLPRIRMSEKEESYASKKSSSFRFEIISPHSSPGPKSDDKNLRYLYDESRSPRYTQKYSRHGGHSRSPIKIEVVDDRFRDEERRNRRLSNIESKLKQISIDGQKNVDKSQLPVARPSGEILREKAPSVQVTHSGGKGSVEENPSERKNNNPESSTDLRTKSQATHSSAGGGPESPHITQSNENNWAIFGPSTENNDPKTPNTDTSKPSKTKAASEAATPPKNPLDLLLFELSGPVTPVTGGMSQAPSGTNNDSTTTTAENANTWDFPSNSVGKTTASPNNTSVWSFTSTPATESAQPSNEVPPHTEVSHAHEPSSMQYLPSVLTGRSSTTQPTNSPVKDIASNNQSSAAPSTNDSSWGFTKLSSQTTSKPTQETRPGVGSQPSKVETKSSGRMELPEDLFTSSYLSGPAPLAGWQNVQPHGMGYGMQYYHNAVPPSALPNAPKSSNPFDVTDGRSLIHASSLPTMASLHSVPPAVSPRTGLMHASSLGSLSQSPCYASPVPMGGYQVNNKEQPTRPQRTDSFNSEFSAFGSLDPTQQSNRGLNTSKTANSSSNTRRNPFD	689

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo9g00695	689	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	12	130	IPR001164	GO:0005096
	Pumo9g00695	689	MobiDBLite	consensus disorder prediction	178	197	-	-
	Pumo9g00695	689	PRINTS	HIV Rev interacting protein signature	24	43	IPR001164	GO:0005096
	Pumo9g00695	689	PRINTS	HIV Rev interacting protein signature	43	60	IPR001164	GO:0005096
	Pumo9g00695	689	PRINTS	HIV Rev interacting protein signature	61	82	IPR001164	GO:0005096
	Pumo9g00695	689	MobiDBLite	consensus disorder prediction	439	517	-	-
	Pumo9g00695	689	PANTHER	ARFGAP/RECO-RELATED	1	688	IPR044820	GO:0005096
	Pumo9g00695	689	MobiDBLite	consensus disorder prediction	634	689	-	-
	Pumo9g00695	689	SUPERFAMILY	ArfGap/RecO-like zinc finger	11	123	IPR037278	-
	Pumo9g00695	689	FunFam	Arf-GAP domain and FG repeat-containing protein 1	1	134	-	-
	Pumo9g00695	689	MobiDBLite	consensus disorder prediction	232	521	-	-
	Pumo9g00695	689	MobiDBLite	consensus disorder prediction	366	432	-	-
	Pumo9g00695	689	MobiDBLite	consensus disorder prediction	268	282	-	-
	Pumo9g00695	689	CDD	ArfGap_AGFG	12	122	-	-
	Pumo9g00695	689	Gene3D	Arf GTPase activating protein	1	132	IPR038508	-
	Pumo9g00695	689	SMART	arf_gap_3	12	130	IPR001164	GO:0005096
	Pumo9g00695	689	MobiDBLite	consensus disorder prediction	283	341	-	-
	Pumo9g00695	689	Pfam	Putative GTPase activating protein for Arf	13	123	IPR001164	GO:0005096
	Pumo9g00695	689	MobiDBLite	consensus disorder prediction	630	689	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo9g00695	Pumo-Chr9	13730768	13741666	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo9g00695	12	104	C2H2 Transcription Factor Family	AT4G05330	35.052	9.66e-12	65.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo9g00695	-		-	gmx:102660856	1114.37