Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00686 ATGGAGCGGCTCGGGAACTTAAACGGTAGTCAGCATGTTATAGAAATAGCTGGGAGCGCTGAAGCATCCACTTCGTCTGCATCACATCATGATAGACATTTTAATGGCACAGATGTGACACAGCATGAAGAAAGAATTAGCGGTGCTAGGATGCCTCTTTCTCAGCCTTCGATTTCATCAACTAGTGTATCTAATGGGTCAAATAGTCGGAACTCATCATTCATGAGACGTGCGGATACTCGGCGGAATAGGAGTCCTGTGCATTCAGGGTTATGGATATCTATTGAGCTGGTCCTACTAGTGAGCCAGATTGTTGCATCTATCGTTGTTTTGTCTTTGTCAAGGCATGAACATCCGCGTACCCCGTTGTTTCAATGGATCATTGGTTATGCTTCGGGATGTGCTGCTACTCTCCCTCTTCTTTATTGGCGGTATTATCATCATAACCATATGCGAGAGCAAGATTCATCTCAATCAAGGCAAACGTCTCCACGGATTAATGATCCTTCGGGGACACTTCTTTTCAGTTCCAGAACTAATGGTGGAGAAGATGGTCAGGCTGCTGTTGCATCCTCCAGAAGCAATCAAGCTTCATTATTGATGAATAGAAGAATGAAGACACTAGTGGAATACTTCAAAATATCTTTAGATTGCTTTTTTGCTGTATGGTTTGTTGTTGGAAATGTATGGATCTTTGGGGGACATTCATCTTCCCAAGAAGCTACTAACTTGTACAGGTTATGTATAGTGTTTCTTGCATTTAGCTGTATTGGTTATGCTATGCCCTTCATTCTCTGCTCAACAATCTGCTGTTGTCTCCCTTGTATAATTTCTATCCTTGGGGTTAGAGAGGATATGTCGCAAAACAGAGGGGCAACTTCTGAATCTATTAATGCTTTGCCAACTTACAAGTTCAAAATGAAGAAAAATAAAAGACATGGCGAAGGTAACTCAGCTGCTGCCGAAGGTGGAGTTGTGGCTGCAGGAACTGAAAAAGAGCGTGTGATATCTGGAGAAGATGCGGTTTGCTGCATCTGCCTGGCAAAGTATGAAAATAACGATGAGCTGAGAGAGTTGCCTTGTTCTCATCTTTTCCACAAAGACTGCGTCGATAAATGGTTGAAGATAAATTCATTGTGCCCTCTCTGCAAGAGTGATGTTGGTGAGAGCCTAACAGGATTGGTCTCTGGAGAAGATGCCACCCAACAACGGGGTGAGAGCAGGGTTGAGAATGGCCTCACGAATACCTCAGTTTAG 1257 0.4344 MERLGNLNGSQHVIEIAGSAEASTSSASHHDRHFNGTDVTQHEERISGARMPLSQPSISSTSVSNGSNSRNSSFMRRADTRRNRSPVHSGLWISIELVLLVSQIVASIVVLSLSRHEHPRTPLFQWIIGYASGCAATLPLLYWRYYHHNHMREQDSSQSRQTSPRINDPSGTLLFSSRTNGGEDGQAAVASSRSNQASLLMNRRMKTLVEYFKISLDCFFAVWFVVGNVWIFGGHSSSQEATNLYRLCIVFLAFSCIGYAMPFILCSTICCCLPCIISILGVREDMSQNRGATSESINALPTYKFKMKKNKRHGEGNSAAAEGGVVAAGTEKERVISGEDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINSLCPLCKSDVGESLTGLVSGEDATQQRGESRVENGLTNTSV 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00686 418 SMART ring_2 343 383 IPR001841 -
Pumo9g00686 418 Pfam Ring finger domain 343 384 IPR001841 -
Pumo9g00686 418 ProSiteProfiles Zinc finger RING-type profile. 343 384 IPR001841 -
Pumo9g00686 418 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 387 - -
Pumo9g00686 418 MobiDBLite consensus disorder prediction 19 81 - -
Pumo9g00686 418 MobiDBLite consensus disorder prediction 397 418 - -
Pumo9g00686 418 SUPERFAMILY RING/U-box 335 390 - -
Pumo9g00686 418 MobiDBLite consensus disorder prediction 52 74 - -
Pumo9g00686 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 326 390 IPR013083 -
Pumo9g00686 418 FunFam E3 ubiquitin-protein ligase 326 392 - -
Pumo9g00686 418 MobiDBLite consensus disorder prediction 26 45 - -
Pumo9g00686 418 SMART ringv_2 342 384 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00686 Pumo-Chr9 13171430 13179899 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00686 76 390 C3H Transcription Factor Family AT1G80400 58.750 6.05e-139 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00686 - - gmx:100778728 749.969