Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00680 ATGGATAGAGAAAATGCTGTAATGGGTGGTGTCAGAGAAGGTGAAGAGCGTGGTGGTGTTCGGGTCACTCGAGCAATGGCTAGAGCTGCATTGGGAGGGGTCTCTGCATCTTCAAGACCATCCTTCAAGAAGGAACACAAAAACAAAAACAAAAACAAAGGTTCAGACAAGAGCAGGGTGGCACTAGCAGATGTAACTAACATGTGCAGAAAATCGCAGCAGAATAAGTGTGCTACATCGAAATCTCAGAGAAGAAGAGGTTATAAGAAGACAAACACAAAGGGAGCTTCCGATGTCTCCATACAAGTTTTGTCAACTCAAGAAGATGTTAGAGCAAAGTTAGCAAAAGATTTATCCACAATATCGATGGTACAGTCACATGAGGTTATTGTAGCTGAAAGTCTGGAAGACAGAGAGCTAGTGCAACCTTCGATGTCTGTTATGACAGGTCCTCTGCTTTCAATGCAGGACTCTATGAAGTCTTATGAACTCAGCTCTTCAAACAAAGACATTGATATGATTTCTGAGAAACTAAAATCTTCCGATGGTTTGGGCATTGTGGACATTGATTCGGTGGAGTTAAAGGATCCTCAAGTGTGGAGTTCATATGCCCCCGATATATACAATAATATATTTGTCAGGGAGTTTGATAGGAGACCGTTAACCGATTACATGGACGTGTTGCAGCAAGATATCAGTCCAAGCATGCGAGGAATTCTGATTGATTGGCTTGTGGAGGTTTCTGAGGAATATAAGCTAGTTCCAGATACTCTTTACCTTACAGTGAATCTGATTGATCGGTTTCTTTCTCAAAGTTTGATTCAGAAACAAAGGCTCCAGTTGGTGGGTGTTACTTGCATGCTGATTGCATCGAAATATGAAGAGATTTGTGCTCCTCGAGTGGAAGAATTTTGCTTCATCACAGATAATACGTACACAAAAGCAGAGGTATTGAAAATGGAGAGTGAGGTTCTAAATCTGTTGCATTTTCAATTATCTGTTCCCACCACTAAAACATTTCTCAGGAGGTTCATCCTAGCAGCACAAACTTCTTACAAGGTTTCTTATGTTGAACTGGAATTTCTGGCAAATTATTTAGCAGAGCTTACTCTTGTTGAATACAGCTTCTTGCAGTTTCTACCTTCCCTGATAGCTGCATCTGCTGTATTACTCGCCAGATGGACCCTCAACCAATCAGAACATCCATGGAATTCAACCATGGAACACTATACAAATTACAAAGTGTCAGAGCTTAAAACTACTGTCCTTGCACTTGCGGATTTGCAACTTGATACGAAAGGCTATCCTCTTAATGCTATACGTGAAAAATATAAACAGCAGAAGTTCAACAGTGTGGCAAATTTGTCTGCAAAACCGGTGCAGTCACTTTTCGAGGCTCAAGTATAA 1407 0.4094 MDRENAVMGGVREGEERGGVRVTRAMARAALGGVSASSRPSFKKEHKNKNKNKGSDKSRVALADVTNMCRKSQQNKCATSKSQRRRGYKKTNTKGASDVSIQVLSTQEDVRAKLAKDLSTISMVQSHEVIVAESLEDRELVQPSMSVMTGPLLSMQDSMKSYELSSSNKDIDMISEKLKSSDGLGIVDIDSVELKDPQVWSSYAPDIYNNIFVREFDRRPLTDYMDVLQQDISPSMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSQSLIQKQRLQLVGVTCMLIASKYEEICAPRVEEFCFITDNTYTKAEVLKMESEVLNLLHFQLSVPTTKTFLRRFILAAQTSYKVSYVELEFLANYLAELTLVEYSFLQFLPSLIAASAVLLARWTLNQSEHPWNSTMEHYTNYKVSELKTTVLALADLQLDTKGYPLNAIREKYKQQKFNSVANLSAKPVQSLFEAQV 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00680 468 FunFam Cyclin A1 322 454 - -
Pumo9g00680 468 FunFam Mitotic cyclin 6 220 320 - -
Pumo9g00680 468 CDD CYCLIN_AtCycA_like_rpt1 196 331 - -
Pumo9g00680 468 MobiDBLite consensus disorder prediction 1 22 - -
Pumo9g00680 468 MobiDBLite consensus disorder prediction 1 59 - -
Pumo9g00680 468 PANTHER CYCLINS 159 446 IPR039361 -
Pumo9g00680 468 PIRSF Cyclin_A_B_D_E 22 467 IPR046965 GO:0016538|GO:0044772
Pumo9g00680 468 Pfam Cyclin, N-terminal domain 206 333 IPR006671 -
Pumo9g00680 468 SUPERFAMILY Cyclin-like 195 332 IPR036915 -
Pumo9g00680 468 SMART Cyclin_C_2 335 458 IPR004367 -
Pumo9g00680 468 ProSitePatterns Cyclins signature. 237 268 IPR006671 -
Pumo9g00680 468 SMART cyclin_7 242 326 IPR013763 -
Pumo9g00680 468 SMART cyclin_7 339 427 IPR013763 -
Pumo9g00680 468 MobiDBLite consensus disorder prediction 72 94 - -
Pumo9g00680 468 Gene3D - 220 333 - -
Pumo9g00680 468 Gene3D - 206 454 - -
Pumo9g00680 468 CDD CYCLIN_AtCycA-like_rpt2 335 449 - -
Pumo9g00680 468 SUPERFAMILY Cyclin-like 334 456 IPR036915 -
Pumo9g00680 468 Pfam Cyclin, C-terminal domain 335 456 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00680 Pumo-Chr9 12923035 12930003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00680 18 464 Core Cell Cycle Gene Families AT5G25380 52.700 4.19e-147 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00680 K06627 - gmx:100777132 737.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00680 9 12923035 12930003 Pumo10g00029 10 862727 866063 PCT