Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00677 ATGGCTGTGCTGAGAATGGCTCAGCATAATAACACTGCCAACAACAACATTAAAAACATTGTGAACCAACAACATCAACAGCTAGTGAAGTCAATGTTCCATGACTTTCTTGGCATGAAGAACAACCCCATTGACTCCAATGTCCTTTATGCCCCTCGTGTCCACGTCACCTCCTCTTCCACCACCGTGTCCCGCGGCGCAGCCTCCTCCGACCTCGCTTCCGAAGGACAGGTAGGGAATCATCTTGAGGGAGTTCCATTCTGTGGCACAAGGAGTGATTTTTCTGGCATTGAGATAGGCAACAGACTAGTGGGAAACAAGAGAAGTAATTCTGATTCCATTTTTATGGGTTCCTCCAGAGATTCCTTCCAAATGGTCCCTGATTCCCTTCGAAACTCACATTTGATGAAGATGTTCCGGAATGCAGCTGGATCGGATTGCCATAGAAGGCCTAAAGAAGATGAAGTGTTCCTCAGTATGCAGTCACTAAAGCCAACTAGTGGTTCTCAGATATTGCAGCCTCCCACTGGGACTAAGACTGATGCAAATAAATGGGAACAATCTATTCTTGTGAATGTTGGCCATTCCATGCAGCATCCGCCTCGTGGTGGTCAATTAACGCCTTTTATGGACCAAATCACTTCAAACAGGATGAGGGATACCAATGCTGGTCCTTCATTTATCTCTCAGTTAGCTGCTGATGAAGGGTCTAGAACCGGAATCAAGGGCCCTGGGATTTTGAGTTCCATAAACACAATGAATGCAGTCACTGAGAAAACTTCATCTATACTTGGTGGCAGCAGACCAAAGCCTGTGACTAACATAGTAGACCCAGAATCTTCCACACCTTTGAATCGACGTGGCTTATCATCTGCCAGCTGTCAGATGACTATTTTTTATGGAGGTCAAGCTCATGTGTTTGATGATGTCCAGCCTAACAAGGCAGATGTTATAATGGCGTTAGCAGGGTCAAATGGTGGATCTTGGTCCCCAACATGCTCACCCAAATCTTCTGTAAAGCTACACCATGATAATAACTCGCGAAATGAAGAAAATGAAACAGTTATAGTGAGTAACATATCAGTCCCTCCGGATCGTAATGGAAGATTGTCTAGTACCAGCAGTTCTAGTCATGCCATTGGGCCAGGTGATCGACTAACTACTCCTACAGTTGCAGGGGCACATCAGGGAAGTATTGTAGCTAAAGATACAAGAAATCCGGTTCAAGCAGCAAATCCCAGTTCTGAAAGACAAAAGAGCACAATGATAGAGTTAGTCTAG 1281 0.4504 MAVLRMAQHNNTANNNIKNIVNQQHQQLVKSMFHDFLGMKNNPIDSNVLYAPRVHVTSSSTTVSRGAASSDLASEGQVGNHLEGVPFCGTRSDFSGIEIGNRLVGNKRSNSDSIFMGSSRDSFQMVPDSLRNSHLMKMFRNAAGSDCHRRPKEDEVFLSMQSLKPTSGSQILQPPTGTKTDANKWEQSILVNVGHSMQHPPRGGQLTPFMDQITSNRMRDTNAGPSFISQLAADEGSRTGIKGPGILSSINTMNAVTEKTSSILGGSRPKPVTNIVDPESSTPLNRRGLSSASCQMTIFYGGQAHVFDDVQPNKADVIMALAGSNGGSWSPTCSPKSSVKLHHDNNSRNEENETVIVSNISVPPDRNGRLSSTSSSSHAIGPGDRLTTPTVAGAHQGSIVAKDTRNPVQAANPSSERQKSTMIELV 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00677 426 MobiDBLite consensus disorder prediction 402 426 - -
Pumo9g00677 426 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 188 363 IPR040390 -
Pumo9g00677 426 MobiDBLite consensus disorder prediction 351 383 - -
Pumo9g00677 426 SMART tify_2 289 324 IPR010399 -
Pumo9g00677 426 MobiDBLite consensus disorder prediction 326 340 - -
Pumo9g00677 426 MobiDBLite consensus disorder prediction 326 426 - -
Pumo9g00677 426 ProSiteProfiles Tify domain profile. 289 324 IPR010399 -
Pumo9g00677 426 Pfam tify domain 291 323 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00677 Pumo-Chr9 12879413 12884274 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00677 6 322 Tify Gene Family AT4G32570 37.612 1.07e-47 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Pumo9g00677 tify 3.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00677 - - gmx:100807222 475.322