Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00674 ATGCAACAAATCCTATTGCAGAGGGCTCAACAGCAGCAACAACAACAACAACAGCAGCAGCAGCAACCACAACAGCAGCAGCAGCAACAACCACAGCCGCAACATCAGCAGCCACCACCACAGCAACAGCAGGGCAGGGATAGGGCTCATCTCTTAAATGGTGGTACAAATGGGTTAGTTGGAAACCCTAGCACTGCAAATGCACTAGCAACAAAGATGTATGAGGAAAGGTTAAAATTGCCCCTTCAAAGGGACTCTTTGGAAGATGCAACAATGAAGCAAAGATTTGGAGACCAACTCTTGGACCCAAATCATGCCTCAATATTGAAGTCATCTGCAGCTACCGGCCAGCCTTCAGGGCAAGTTTTGCATGGTGCTGCTGGTGCAATGTCTCCACAAGTTCAAGCTCGTAGTCAGCAATTACCAGGATCTACTCCGGATATAAAGAGTGAGATCAATCCCGTTTTAAATCCCAGAGCTGTGGGTCCTGAAGGATCGTTGATAGCAATGCCTGGTTCAAATCAAGGTAGCAACAATTTGACTCTGAAAGGGTGGCCACTCACAGGCTTGGAGCAACTACGTTCTGGTCTACTCCAGCAACAGAAACCTCCTTTCATACAGTCTCCTCAGCCATTTCATCAACTTCCAATGTTGACACCACAGCATCAGCAACAGCTAATGCTAGCACAACAAAATTTGGCATCGCCATCTGGCAGTGATGATAATAGAAGACTCAGAATGCTGCTGAATAACAGAAATATGGGTGTAACTAAGGATGGTCTTTCAAACCCTGTTGGTGATGTAGTATCAAATGTTGGATCACCTCTTCAAGCAGGTGGCCCTGCTTTTCCACGCAGTGATACAGATATGCTAATGAAGTTGAAACTGGCGCATTTACACCAACAACAGCAGAATGCCAATCCACAACAGCAGCAACTGCAACAGCATACTCTTTCGAATCAGCAATCTCAGACTTCAAATCATAGCATGCATCAGCAAGATAAAATGGGGGGAGGTGGTGGTAGTGTCAATGTGGATGGTAGCATGTCAAACTCCTTTAGAGGCAATGATCAGGTTTCCAAAAACCAGACTGGGAGAAAGAGAAAGCAGCCTGCATCTTCTGGTCCCGCCAATAGTTCTGGAACAGCTAATACAGCTGGTCCATCTCCAAGTTCAGCACCCTCAACTCCCTCAACACATACACCTGGTGATGTGATGTCAATGCCTGCATTACCTCATAGTGGTAGTTCTTCAAAGCCATTAATGATGTTTAGTGCTGATGGTGCTGGAACTCTGACATCACCTTCAAACCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGATGTGGACCGTTTTGTGGAGGATGGATCTCTTGATGATAATGTGGAGTCTTTTTTATCCCATGATGATACAGACCCTAGAGATACTGTTGGTCGTTGTATGGATGTAAGCAAAGGTTTCACATTTTCTGAAATAAATTCTGTACGTGCAAGCACTAACAAAGTTGTCTGTTGCCATTTCTCGTCTGATGGGAAATTGCTTGCTAGTGGTGGCCATGACAAAAAGGCTGTTTTATGGTTCACAGATTCTCTAAAACAGAAAGCTACTCTTGAAGAGCATGTATCTTTAATCACTGACGTCCGTTTCAGTCCAAGCATGTCTCGTCTTGCAACATCTTCATATGACAAAACTGTCAGGGTGTGGGATGTTGAAAATCCTGGATATTCGCTTCGTACCTTTACAGGACATTCTACATCTGTTATGTCACTAGATTTTCACCCTAATAAAGAGGATCTTATCTGCTCTTGTGATGTTGATGGTGAGATACGATATTGGAGCATTAACAATGGCAGTTGTGCTAGAGTCTCAAAGGGTGGTACTGCTCAGATGAGATTTCAACCTCGTCTAGGGAGGTACCTAGCTGCAGCTGCAGAGAATGTTGTTTCTATACTTGATGTGGAAACACAAGCATGTCGATATTCACTAAAGGGACATACAAAATCGATACATTCTGTGTGTTGGGATCCTTCTGGGGAGTTTCTGGCATCTGTCAGTGAGGATTCTGTCAGGGTTTGGACTCTTGGATCAGGGAGTGAAGGGGAGTGTGTTCACGAGCTTAGCTGTAATGGCAATAAGTTTCACTCGTGTGTTTTCCATCCAACGTATTCTTCACTGTTGGTCGTTGGTTGTTACCAGTCATTGGAGCTCTGGAACATGACTGAGAACAAGACGATGACTCTATCTGCTCATGAAGGTCTTATTGCTGCATTGGCGGTTTCTACAGTAAATGGTTTTGTTGCTTCAGCCAGTCATGACAAGTTTGTCAAGCTCTGGAAGTGA 2346 0.4454 MQQILLQRAQQQQQQQQQQQQQPQQQQQQQPQPQHQQPPPQQQQGRDRAHLLNGGTNGLVGNPSTANALATKMYEERLKLPLQRDSLEDATMKQRFGDQLLDPNHASILKSSAATGQPSGQVLHGAAGAMSPQVQARSQQLPGSTPDIKSEINPVLNPRAVGPEGSLIAMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPPFIQSPQPFHQLPMLTPQHQQQLMLAQQNLASPSGSDDNRRLRMLLNNRNMGVTKDGLSNPVGDVVSNVGSPLQAGGPAFPRSDTDMLMKLKLAHLHQQQQNANPQQQQLQQHTLSNQQSQTSNHSMHQQDKMGGGGGSVNVDGSMSNSFRGNDQVSKNQTGRKRKQPASSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVMSMPALPHSGSSSKPLMMFSADGAGTLTSPSNQLWDDKDLELQADVDRFVEDGSLDDNVESFLSHDDTDPRDTVGRCMDVSKGFTFSEINSVRASTNKVVCCHFSSDGKLLASGGHDKKAVLWFTDSLKQKATLEEHVSLITDVRFSPSMSRLATSSYDKTVRVWDVENPGYSLRTFTGHSTSVMSLDFHPNKEDLICSCDVDGEIRYWSINNGSCARVSKGGTAQMRFQPRLGRYLAAAAENVVSILDVETQACRYSLKGHTKSIHSVCWDPSGEFLASVSEDSVRVWTLGSGSEGECVHELSCNGNKFHSCVFHPTYSSLLVVGCYQSLELWNMTENKTMTLSAHEGLIAALAVSTVNGFVASASHDKFVKLWK 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00674 781 ProSiteProfiles Trp-Asp (WD) repeats profile. 749 781 IPR001680 GO:0005515
Pumo9g00674 781 MobiDBLite consensus disorder prediction 344 403 - -
Pumo9g00674 781 ProSitePatterns Trp-Asp (WD) repeats signature. 558 572 IPR019775 -
Pumo9g00674 781 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 749 781 - -
Pumo9g00674 781 ProSiteProfiles Trp-Asp (WD) repeats profile. 664 704 IPR001680 GO:0005515
Pumo9g00674 781 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 539 574 - -
Pumo9g00674 781 SUPERFAMILY WD40 repeat-like 491 781 IPR036322 GO:0005515
Pumo9g00674 781 MobiDBLite consensus disorder prediction 1 64 - -
Pumo9g00674 781 MobiDBLite consensus disorder prediction 1 32 - -
Pumo9g00674 781 PANTHER TRANSCRIPTION ACTIVATOR MSS11 1 781 - -
Pumo9g00674 781 Pfam WD domain, G-beta repeat 498 528 IPR001680 GO:0005515
Pumo9g00674 781 Pfam WD domain, G-beta repeat 660 694 IPR001680 GO:0005515
Pumo9g00674 781 Pfam WD domain, G-beta repeat 578 615 IPR001680 GO:0005515
Pumo9g00674 781 Pfam WD domain, G-beta repeat 537 571 IPR001680 GO:0005515
Pumo9g00674 781 Pfam WD domain, G-beta repeat 744 781 IPR001680 GO:0005515
Pumo9g00674 781 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 582 620 - -
Pumo9g00674 781 SMART WD40_4 701 740 IPR001680 GO:0005515
Pumo9g00674 781 SMART WD40_4 490 529 IPR001680 GO:0005515
Pumo9g00674 781 SMART WD40_4 575 615 IPR001680 GO:0005515
Pumo9g00674 781 SMART WD40_4 532 571 IPR001680 GO:0005515
Pumo9g00674 781 SMART WD40_4 657 695 IPR001680 GO:0005515
Pumo9g00674 781 SMART WD40_4 742 781 IPR001680 GO:0005515
Pumo9g00674 781 ProSiteProfiles Trp-Asp (WD) repeats profile. 497 528 IPR001680 GO:0005515
Pumo9g00674 781 ProSiteProfiles Trp-Asp (WD) repeats profile. 582 624 IPR001680 GO:0005515
Pumo9g00674 781 MobiDBLite consensus disorder prediction 300 333 - -
Pumo9g00674 781 Gene3D - 475 626 IPR015943 GO:0005515
Pumo9g00674 781 Gene3D - 627 781 IPR015943 GO:0005515
Pumo9g00674 781 Coils Coil 1 22 - -
Pumo9g00674 781 FunFam Transcriptional corepressor LEUNIG 625 781 - -
Pumo9g00674 781 MobiDBLite consensus disorder prediction 300 421 - -
Pumo9g00674 781 CDD WD40 493 781 - -
Pumo9g00674 781 ProSiteProfiles Trp-Asp (WD) repeats profile. 539 574 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00674 Pumo-Chr9 12787386 12800422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00674 576 780 Miscellaneous Gene Families AT5G08390 25.238 1.53e-13 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00674 - - gmx:100779972 1363.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00674 9 12787386 12800422 Pumo10g00040 10 981967 998945 PCT