Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00653 ATGGAATTCTCCCCGCGCTCCCGCAACACCGACTCCTGGGACGAGCCCTTCGCGCCGGCGTCGACCAAGCTCCGTCTCATGTGCAGCTACGGCGGCCACATCGCCCCGCGCCCCCACGACAAGTCCTGCTACGTCGGCCACATCGCCCCGCGCCCCCACGACAAGTCCTGCTACGTCGGCGGCGACACGCGCATCATCGTGGCCGAACGCGCCACGTCATTCGCGGACCTCTCCACGCGCCTCTCGAAGACGTTCCTGAACGGAAGACCCTTCACGCTCAAGTACAAGCTCCCGAACGAGGACCTCGATTCCCTCATCTCCGTCACCACCGACGAAGACCTCGAGAACATGATCGGCGAGTACGACCTCACCACCGCCGCCGTCAAACCCTCCCGCATCCGCCTCTTCCTCTTCCCCACCAAACCCGATTCCACTCACTCCATCCCTCCGCAGATTCTTAACACGTCAGCGAAGTCGGACGATTGGTTGTTGAATGCCAGTCTCTCAATGGACATTAATGGACCCTACACGAGCAGAGCTCTGCCGCCGCCCCAATCCCAGTCTCTCGGCAACCTACAACAGCGGTTGCAGACGCTGCTCGAAGGTGCTAGAGAGAGTTGGACCCACGCAATCTTCTGGCAGTCTTCTTATGACTCTTCTAGCGCTTCCATTCTCTATTGGGGCGACGGGTATTACAAGGGCGAGGATGACGAAAGAAAAGGCAAAGCCCCCAAAACGACGTCGTCATCCGTAGAGCATGCCCACCGCGACACAGAGTTGTTCTTTCTGGTGTCTATGACTCAGTCCTTTGTCAACGGCATCGGCCTGCCGGGCCAGGCTTTCTTTAATTCCAGCCCGGTTTGGGTCGCCGGACCGGATCGGCTATCCGAATTGGCCTGCGAACGTGCCCGGCAGGGGCTGGTGTATGGGCTTCAGACTCTGGTTTGCATACCGTGTGCAAACGGCGTCGTTGAGCTGGGTTCCACGGAGGTGATTTTACCCAACCCTGATCTGATGAACAGAGTGCGGCTTTTGTTCAACCCCGACTTTTGGATTTCCCCGAACAACCCGGTGCACGAGCCTCCTCCTATAAAACTTCTCCGGTAA 1107 0.5881 MEFSPRSRNTDSWDEPFAPASTKLRLMCSYGGHIAPRPHDKSCYVGHIAPRPHDKSCYVGGDTRIIVAERATSFADLSTRLSKTFLNGRPFTLKYKLPNEDLDSLISVTTDEDLENMIGEYDLTTAAVKPSRIRLFLFPTKPDSTHSIPPQILNTSAKSDDWLLNASLSMDINGPYTSRALPPPQSQSLGNLQQRLQTLLEGARESWTHAIFWQSSYDSSSASILYWGDGYYKGEDDERKGKAPKTTSSSVEHAHRDTELFFLVSMTQSFVNGIGLPGQAFFNSSPVWVAGPDRLSELACERARQGLVYGLQTLVCIPCANGVVELGSTEVILPNPDLMNRVRLLFNPDFWISPNNPVHEPPPIKLLR 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00653 368 Gene3D - 56 139 - -
Pumo9g00653 368 Pfam PB1 domain 55 139 IPR000270 GO:0005515
Pumo9g00653 368 PANTHER OS05G0427100 PROTEIN-RELATED 5 46 - -
Pumo9g00653 368 CDD PB1_UP2 27 138 - -
Pumo9g00653 368 SUPERFAMILY CAD & PB1 domains 54 148 - -
Pumo9g00653 368 ProSiteProfiles PB1 domain profile. 51 140 IPR000270 GO:0005515
Pumo9g00653 368 SMART PB1_new 52 140 IPR000270 GO:0005515
Pumo9g00653 368 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 192 346 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00653 Pumo-Chr9 12182163 12183433 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00653 192 349 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 51.064 3.39e-54 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00653 K13422 - gmx:100775954 272.322