Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00634 ATGGTACAAGCAAAGAAGTTCAGGGGAGTAAGGCAGCGCCAATGGGGCTCATGGGTCTCAGAAATTCGCCACCCATTACTGAAGAGAAGGGTATGGCTAGGTACATTTGAGACAGCAGAGGCTGCAGCAAGGGCATATGACCAAGCAGCCATTTTGATGAGTGGTCAAAATGCCAAGACCAATTTCCCTACACCAATGAATATTCAACCTCAAGAAGGTGCTACTTCTTCTCCTAATTGTGTAGACCCTTTCTCATCTCCCAATGTTCTTTCTGAGAATCTGAGTAGAAAGCTCAAGAGGTGCTGCAAAGACCCTTCTCCTTCCCTCACATGTCTGAGGCTAGATGCTGACAACTCCCATATTGGAGTGTGGCAAAAGGGTGCAGGACCGCATTCAGACTCAAATTGGATCGTGAGGGTGGAGCTTGGAAAGAAACATGGAGAGGGTGAATCAAGTGTATCATCATCAGCAGGGTCACCACCAAAAACTGGTGTTGATGGTGATGGTGATGGTTATGGTGATGAAGAGGATAGAATTGCCATGCAGATGATTGATGAGCTACTTAATTGGAATTATCCATGTGATTCAAGTAATTAA 597 0.4539 MVQAKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMSGQNAKTNFPTPMNIQPQEGATSSPNCVDPFSSPNVLSENLSRKLKRCCKDPSPSLTCLRLDADNSHIGVWQKGAGPHSDSNWIVRVELGKKHGEGESSVSSSAGSPPKTGVDGDGDGYGDEEDRIAMQMIDELLNWNYPCDSSN 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00634 198 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Pumo9g00634 198 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Pumo9g00634 198 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Pumo9g00634 198 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 136 - -
Pumo9g00634 198 MobiDBLite consensus disorder prediction 146 177 - -
Pumo9g00634 198 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Pumo9g00634 198 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Pumo9g00634 198 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Pumo9g00634 198 CDD AP2 5 63 IPR001471 GO:0003700|GO:0006355
Pumo9g00634 198 Gene3D AP2/ERF domain 5 64 IPR036955 GO:0003700|GO:0006355
Pumo9g00634 198 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00634 Pumo-Chr9 11152820 11154115 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00634 1 191 AP2-EREBP Transcription Factor Family AT1G15360 59.799 6.84e-71 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo9g00634 AP2 2.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00634 - - gmx:100784305 324.709