Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00633 ATGCTTTTGTTTGTATTGCTCATTAATGGTAGCCTTTTGTTTTTCATTGTATCATTAAAGTTAAAGCATTATAAAGGTTTTAAGGAGGGTCATACAAGAATTCTTGTGGCAACAGATTTGGTTGGGAGGGGTATTGATATTGAACGTGTGAATATAGTTATAAACTATGACATGCCTGATTCCGCAAATACATACTTGCATAGGGTTGGTAGAGCAGGAAGATTTGGAACCAAAGGCCTTGCAATTGCATTTGTTTCATCTTCGACTGATGTTGATGTTCTCAACAATGTTCAATCCAAGTTTGAAGTGGATATAAAGCAGCTTCCCGAGCGGGTTGATTCACATACCTACATGCAACTGTAG 363 0.3747 MLLFVLLINGSLLFFIVSLKLKHYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSANTYLHRVGRAGRFGTKGLAIAFVSSSTDVDVLNNVQSKFEVDIKQLPERVDSHTYMQL 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00633 120 CDD SF2_C_DEAD 25 85 - -
Pumo9g00633 120 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 22 95 - -
Pumo9g00633 120 SMART helicmild6 1 76 IPR001650 -
Pumo9g00633 120 Pfam Helicase conserved C-terminal domain 22 76 IPR001650 -
Pumo9g00633 120 Gene3D - 17 120 IPR027417 -
Pumo9g00633 120 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 110 IPR027417 -
Pumo9g00633 120 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 116 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00633 Pumo-Chr9 11073411 11075867 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00633 20 118 Eukaryotic Initiation Factors Gene Family AT5G11170 79.798 2.14e-55 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00633 K12812 - gmx:100808957 182.956