Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00631 ATGGGTTGGGTTGACTTGAACCAATCGGGTTTTAAGGAGGGTCATACAAGAATTCTTGTGGCAACAGATTTGGTTGGGAGGGGTATTGATATTGAACGTGTGAATATAGTTATAAACTATGACATGCCTGATTCCGCAAATACATACTTGCATAGGGTTGGTAGAGCAGGAAGATTTGGAACCAAAGGCCTTGCAATTGCATTTGTTTCATCTTCGACTGATGTTGATGTTCTCAACAATGTTCAATCCAAGTTTGAAGTGGATATAAAGCAGCTTCCCGAGCGGGTTGATTCACATACCTACATGCAACTGTAG 315 0.4127 MGWVDLNQSGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSANTYLHRVGRAGRFGTKGLAIAFVSSSTDVDVLNNVQSKFEVDIKQLPERVDSHTYMQL 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00631 104 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 100 IPR001650 -
Pumo9g00631 104 SMART helicmild6 1 60 IPR001650 -
Pumo9g00631 104 Gene3D - 5 104 IPR027417 -
Pumo9g00631 104 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 94 IPR027417 -
Pumo9g00631 104 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 9 79 - -
Pumo9g00631 104 CDD SF2_C_DEAD 11 69 - -
Pumo9g00631 104 Pfam Helicase conserved C-terminal domain 10 60 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00631 Pumo-Chr9 11035357 11040617 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00631 10 102 Eukaryotic Initiation Factors Gene Family AT5G11170 81.720 8.53e-53 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00631 K12812 - gmx:100796232 174.096