Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00610 ATGGGGAAGCCGACGGGGAAAAAGAAAGATCCTTCAACGCCTCCGAAGGCGAACGGCCACCACCACCACAACCCGACAAAATCATGGGACGACAACAAACGCGCGGCGGCGGCGTCGTCCTCGGCGTCGTCAAAGGCGCTGGACGAGGACACGGCGATGTTCATAAACATGTCGCAGGAATTGCGAGAGGAAGGGAACAAGCTCTTCCAGAAGAAGGACCACGAGGGCGCGATGTTAAAGTACGAAAAAGCCCTCAAGCTCTTACCGAAGAGTCACATCGACGTGGCGCACCTCCACACCAGCATGGCCGTGTGCTACATGCAGCTGGGCCTCGGCGAGTACCCACGCGCCATCAGCGAGTGCAACATGGCGCTGCAGGTTTCGCCGAGGTATACAAAAGCGCTGTTGAAGCGTGCGAAGTGCTACGAGGCGCTGAACCGCGTGGATTTGGCGATGCGGGACGTGCGCGTGGTGCTGAACTTGGAGCCTAATAATTCGACCGCCTTGGAGGTTTTGGATAGTTTGAGGATGACCATGGAGGAGAAGGGGATTGTCGTGGACGAGACGGAGATCGCCCTCGCCGCGCTGCAGCACCAGCCGGAGCCGGCGTCGGCGCGGCTGAGGAAGATTGTGAGGGAGAAGATTAAGAAGAAGAAGGAACATAAAGGAGAGGATGAAGGGAAAGCAAAAAAAGTTATAATTGAGGAGAAGGTGAAGGTTGAGAATGTTAAAAAGAAGGATAATAAGGATAAGGAGAAGAAGGTGGTGAAGGAAGAGAAAGAGAAATTGGGGAAGGAGGAGAAGGAGAAAGAGAAATTGGGGGAGAAAGAAAAAGGGGTTGTTACTAGGACTGTGAAGTTGATATATGGAGAGGATATTAGATGGGCTCAATTGCCTGTGAATTGTGGGATGAGGATGGTGAGGGATGTGATAAGGGATAGGTTTCCTGGGTTGAAGGGTGTTCTTGTGAAGTATAGGGATAGGGAGGGTGATTTGGTTACTATTACTAGCACTGCTGAATTGAGGTTGGCTGAGACTTGTCATGTGCTTGGATCGATTCGGCTTTATGTCACGCAGGTTGAGCCGGATCAGGAGCTGTGTTATGATGATGGTGTGGTGGGGGTGGAGGATGGTGGGAGGATGAAGGTGGTTGAGAATGGGGGTGGGGATGGAGGCAGGGGTGAGGGGAAAGGGGTGACTACTGTGGAGGATTGGCTTGTGCAGTTTGCGAGGCTGTTTAAGAATCATGTTGGGTTTGATTCGGATGCGTATTTGGATATTCATGGGATCGGGATGAAGCTGTATTCGGAGGCAATGGAGGATGCGGTGACTAGTGAGGGCGCTCAGGAGCTGTTTGACATTGCCGCGGATAGGTTTCAGGAGATGGCAGGCTTTGGCGTTGTTTAA 1407 0.5252 MGKPTGKKKDPSTPPKANGHHHHNPTKSWDDNKRAAAASSSASSKALDEDTAMFINMSQELREEGNKLFQKKDHEGAMLKYEKALKLLPKSHIDVAHLHTSMAVCYMQLGLGEYPRAISECNMALQVSPRYTKALLKRAKCYEALNRVDLAMRDVRVVLNLEPNNSTALEVLDSLRMTMEEKGIVVDETEIALAALQHQPEPASARLRKIVREKIKKKKEHKGEDEGKAKKVIIEEKVKVENVKKKDNKDKEKKVVKEEKEKLGKEEKEKEKLGEKEKGVVTRTVKLIYGEDIRWAQLPVNCGMRMVRDVIRDRFPGLKGVLVKYRDREGDLVTITSTAELRLAETCHVLGSIRLYVTQVEPDQELCYDDGVVGVEDGGRMKVVENGGGDGGRGEGKGVTTVEDWLVQFARLFKNHVGFDSDAYLDIHGIGMKLYSEAMEDAVTSEGAQELFDIAADRFQEMAGFGVV 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00610 468 Coils Coil 246 276 - -
Pumo9g00610 468 SMART tpr_5 132 165 IPR019734 GO:0005515
Pumo9g00610 468 SMART tpr_5 96 131 IPR019734 GO:0005515
Pumo9g00610 468 SMART tpr_5 58 91 IPR019734 GO:0005515
Pumo9g00610 468 ProSiteProfiles TPR repeat profile. 58 91 IPR019734 GO:0005515
Pumo9g00610 468 CDD PB1 284 357 - -
Pumo9g00610 468 ProSiteProfiles TPR repeat profile. 132 165 IPR019734 GO:0005515
Pumo9g00610 468 SUPERFAMILY CAD & PB1 domains 282 365 - -
Pumo9g00610 468 ProSiteProfiles PB1 domain profile. 282 360 IPR000270 GO:0005515
Pumo9g00610 468 SUPERFAMILY TPR-like 53 177 IPR011990 GO:0005515
Pumo9g00610 468 Gene3D Tetratricopeptide repeat domain 55 183 IPR011990 GO:0005515
Pumo9g00610 468 MobiDBLite consensus disorder prediction 245 272 - -
Pumo9g00610 468 PANTHER PROTEIN CLMP1 1 464 IPR044517 -
Pumo9g00610 468 SMART PB1_new 282 360 IPR000270 GO:0005515
Pumo9g00610 468 MobiDBLite consensus disorder prediction 1 45 - -
Pumo9g00610 468 Pfam PB1 domain 282 359 IPR000270 GO:0005515
Pumo9g00610 468 Gene3D - 282 357 - -
Pumo9g00610 468 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00610 Pumo-Chr9 10455094 10456500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00610 46 165 Calmodulin-binding Proteins AT3G25230 28.682 1.60e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00610 K26538 - mnt:112092242 479.944