Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pumo9g00603 | ATGGAGTCAGGAAACCCTTCATCATCGCCCGATCCCGAATCGCCAACTTCTCCTTCTGCTGGTTTCAACACGGACCAACTTCCTCGCACCCAAACGAGCCATGCCTCCGAAGACGGCCAAACTTCTATGGACCCTGATATCATAGGAGATGATCTCGAAGAACAGGCCGAGGAAGAAGATGGAGAGGATCTTTACAACAACAATTTCATAGATGATTATAGGGAGATGGAGGAGGCTGACCAGTTTGAATCGTTTGGTCTGGATGACTCCTTGGAGGATGACAGGGATTTTGATCAGATCATGGATGATCGAAGGGCTGCGGAGATTGAACTGGATGCTCGAGACGGTCGTGTTTCCAATCGCAGCAGGCTTCCCCACCTTCTCCATGACCAGGGTAATACACATATGGATGACAGTCACAGGGCTTCTAAAAGGGCTCGAGCTGATTTCAGTTCTCCTTTACCAAGTGATGATGACGATGATCTCGATGGGATGCAACGAGGATACTCAAGAGAGGATGTTCCTGTGACTGATCTAACTGGAGATGACCAAGATGATGATAAATTTGACGATGAAGCCGAGATGCATCAAGTTCAAGGAACACTTAGAGAGTGGGTTATAAGAGATGAAGTGCGCCGCTTCATAGCCAGGAAATTCAAGAACTTCTTACTCACATATGTTGATCCAAAAAATGAACAACGGGGCAAGGAATATGTGTGGATGATAAATGATATGGTGTCAGAAGTAATGGAAGATGTTACCAAAAGCATTGTCTTTGAATTACATCCAAATTACAGAAATATACACCAAAAGATTTATGTGCGCATAACTAACTTGCCAGCTCATGATCAGATTCGAAATATAAGCAGGCAGAGCCACTTGAATACAATGATCCGGATTGGGGGAGTAGTAACCAGACGCTCTGGAGTTTTTCCCCAATTGCAGCAGGTGAAGTATGACTGTAACAAATGTGGGGCAATTTTGGGACCTTTTTCCCAGAATTCCTATTCAGAGGTGAAAGTTGGATCCTGTCCGGCATGTCAATCTAAAGGACCCTTCACTGTCAATATTGATCAGACAATTTATAGGAATCTTCAGAAGCTTACACTTCAAGAGAGCCCAGGAATAGTTCCTGCTGGTCGACTACCAAGATACAAGGAAGTGATACTTTTGAATGATCTGATTGACTGCGCTCGGATCGGGGAAGAAATTGAGGTCACAGGTGTTTATACTAACAACTTTGACTTATCCCTGAACACAAAAAATGGATTTCCAGTGTTTGCCACTGTTATTGAGGCAAATTATATTACAAAAAAGCAAGACCTCATCTCTTCTTACAAACTTACACAGGAAGACAGAGAAGAGATTGAAAATTTGGCCAGAGACTCTCGAATCAGAGAAAGAATTATCAAGTCTATTGCTCCTTCGATATATGGTCACGAGGACATAAAAACTGCAATAGCTTTAGCAATGTTTGGAGGCCAAGAAAAAAATGAGGAAGGAAATCATAGACTGCGAGGAGACATAAATGTTCTTCTTCTTGGTGATCCAGGAACAGCAAAGTCTCAGTTTCTCAAGTATGTTGAAAAAACTGCACACAGAGCTGTATACACAACTGGCAAAGGAGCTTCTGCCGTGGGTCTCACAGCTGCAGTTCATAAGGATCCATTCACAAGGGAATGGACTCTCGAGGGAGGAGCCCTTGTGCTAGCTGACAAAGGAATTTGTCTTATTGATGAGTTTGACAAGATGAGTGACCAGGATAGGGTAAGTATCCATGAAGCCATGGAACAGCAGAGTATAAGCATATCAAAAGCAGGAATTGTTACATCTCTTCAGGCACGTTGTTCCGTTATTGCTGCTGCAAATCCTATCGGAGGAAGATATGATTCCTCAAAAACATTTTCTCAAAATGTTCAATTGACAGATCCTATCATTTCTCGTTTTGACATCCTCTGCATTGTGAAGGATGTTGTTGATCCGGCCACCGATGAAACGCTTGCAACGTTTGTCGTTGACAATCACTTCAAGTCACAAGATGCCATTGCATCTGCCATGCCAGCTGATCCAGAGATACTTCCTCAAGAGCTACTGAAGAAGTACATTACATATGCCAGGTTGAATATTTTTCCAAGGTTACAAGATGTAAAAATGGTTGAAGATAAACTGTCAAACATCTACCCCGAACTGCGGAGGGAATCTTCACATGGACAAGGAGTCCCTATTGCCATAAGACACCTTGAATCAATGCTAAGGATGTCTGAAGCTCATGCAAGAATGCATCTCAGAGAACGTGTTACAGAAGAGGATGTGGACATGGCAATTTCGTGTTCTACTTCAATCTTTCATCTCAACGCAAAAATTTGGGGTGCAGAAAGCTCTTCAAAAGTGATTTACTTTAGAATTCATGGAATTTGTGCTGAACAAATATGCCCTTCCCCTAAAATGTGCTGCTTGCTATTGCAGAGCTTTAGAAAATATGTGACTTTCAAGAAGGACCATAATGATTTGCTCCTTTATATTCTCCGGGAACTTGTAAAGAATGCTTTGCATTTAGAAGAAATTGTCACAGGATCTGCTTCGGGTCTAACATACGTAGATGTCAAAGTAGATGATCTCCACAAGAAGGCTCAAGAACATGACATTTATGATCTGAAACCATTCTTCGATAGCAGCCACTTTTCAATGGCCAGTTTTGTATTGGATGAAGAACAGAAAGTGATCAGACATCACCTTACCAGATGA | 2745 | 0.4226 | MESGNPSSSPDPESPTSPSAGFNTDQLPRTQTSHASEDGQTSMDPDIIGDDLEEQAEEEDGEDLYNNNFIDDYREMEEADQFESFGLDDSLEDDRDFDQIMDDRRAAEIELDARDGRVSNRSRLPHLLHDQGNTHMDDSHRASKRARADFSSPLPSDDDDDLDGMQRGYSREDVPVTDLTGDDQDDDKFDDEAEMHQVQGTLREWVIRDEVRRFIARKFKNFLLTYVDPKNEQRGKEYVWMINDMVSEVMEDVTKSIVFELHPNYRNIHQKIYVRITNLPAHDQIRNISRQSHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGAILGPFSQNSYSEVKVGSCPACQSKGPFTVNIDQTIYRNLQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARIGEEIEVTGVYTNNFDLSLNTKNGFPVFATVIEANYITKKQDLISSYKLTQEDREEIENLARDSRIRERIIKSIAPSIYGHEDIKTAIALAMFGGQEKNEEGNHRLRGDINVLLLGDPGTAKSQFLKYVEKTAHRAVYTTGKGASAVGLTAAVHKDPFTREWTLEGGALVLADKGICLIDEFDKMSDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFSQNVQLTDPIISRFDILCIVKDVVDPATDETLATFVVDNHFKSQDAIASAMPADPEILPQELLKKYITYARLNIFPRLQDVKMVEDKLSNIYPELRRESSHGQGVPIAIRHLESMLRMSEAHARMHLRERVTEEDVDMAISCSTSIFHLNAKIWGAESSSKVIYFRIHGICAEQICPSPKMCCLLLQSFRKYVTFKKDHNDLLLYILRELVKNALHLEEIVTGSASGLTYVDVKVDDLHKKAQEHDIYDLKPFFDSSHFSMASFVLDEEQKVIRHHLTR | 914 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pumo9g00603 | 914 | MobiDBLite | consensus disorder prediction | 116 | 168 | - | - | |
| Pumo9g00603 | 914 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 429 | 440 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Pumo9g00603 | 914 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 295 | 312 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Pumo9g00603 | 914 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 353 | 367 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Pumo9g00603 | 914 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 414 | 425 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Pumo9g00603 | 914 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 318 | 330 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Pumo9g00603 | 914 | Pfam | MCM AAA-lid domain | 696 | 777 | IPR041562 | - | |
| Pumo9g00603 | 914 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 224 | 781 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Pumo9g00603 | 914 | SUPERFAMILY | Nucleic acid-binding proteins | 219 | 434 | IPR012340 | - | |
| Pumo9g00603 | 914 | ProSiteProfiles | MCM family domain profile. | 465 | 671 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pumo9g00603 | 914 | MobiDBLite | consensus disorder prediction | 116 | 188 | - | - | |
| Pumo9g00603 | 914 | Gene3D | - | 290 | 411 | IPR012340 | - | |
| Pumo9g00603 | 914 | MobiDBLite | consensus disorder prediction | 67 | 81 | - | - | |
| Pumo9g00603 | 914 | FunFam | DNA helicase | 445 | 798 | - | - | |
| Pumo9g00603 | 914 | Pfam | MCM P-loop domain | 453 | 675 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pumo9g00603 | 914 | CDD | MCM2 | 468 | 776 | - | - | |
| Pumo9g00603 | 914 | Pfam | MCM OB domain | 285 | 412 | IPR033762 | - | |
| Pumo9g00603 | 914 | Gene3D | - | 445 | 797 | IPR027417 | - | |
| Pumo9g00603 | 914 | FunFam | DNA helicase | 313 | 363 | - | - | |
| Pumo9g00603 | 914 | Gene3D | - | 246 | 281 | - | - | |
| Pumo9g00603 | 914 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 475 | 776 | IPR027417 | - | |
| Pumo9g00603 | 914 | ProSitePatterns | MCM family signature. | 574 | 582 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Pumo9g00603 | 914 | SMART | mcm | 281 | 782 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Pumo9g00603 | 914 | MobiDBLite | consensus disorder prediction | 82 | 96 | - | - | |
| Pumo9g00603 | 914 | MobiDBLite | consensus disorder prediction | 47 | 66 | - | - | |
| Pumo9g00603 | 914 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 566 | 580 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pumo9g00603 | 914 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 594 | 607 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pumo9g00603 | 914 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 618 | 630 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pumo9g00603 | 914 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 506 | 521 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pumo9g00603 | 914 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 645 | 653 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pumo9g00603 | 914 | Gene3D | - | 313 | 363 | - | - | |
| Pumo9g00603 | 914 | Pfam | Mini-chromosome maintenance protein 2 | 41 | 179 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Pumo9g00603 | 914 | MobiDBLite | consensus disorder prediction | 1 | 99 | - | - | |
| Pumo9g00603 | 914 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pumo9g00603 | Pumo-Chr9 | 10305214 | 10311303 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pumo9g00603 | 21 | 909 | Core DNA Replication Machinery Family | AT1G44900 | 64.513 | 0.0 | 1133 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pumo9g00603 | K02540 | - | gmx:100799441 | 1379 |