Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00597 ATGGCGTACCATAACCACAACCTTTCACAACAAGACCTTCCACTCCACCATTTCCCGAACCAATCCATATTACCACCAGAGCAACAACAGCAGCAGCAGCAGCAGCAGCAACAACAACTCCCGTCCTCACCCGATCCTAACTCCAAACCTCCCTCCGATCCACACCCTCTCCAAACCGCGCCCAATTGGCTCAACGACGCGCTCCTCCGCACTCACTACACCGACACCGCCACCGCCACCGCCACCGTTGCCGCCACCAACAACAACGTTAACGGTTCCAATTTCCTGAACCTGAACCCCGGCGCCTCCGTCGCGCAGTGGCTGGCGCGGCCGGTGCTCCACCGCCACCCCGGCGAGGTCATCGACGCCGGCGCCGGCGAGTCCCTCCTGGAGCCGGCTGATTTGAAGGGCGGCGGCGGAGACGGCCCCGGCGACGCCGTGAACTGGCAGATTGGGAGGTGGAAGGCGGAGATTCTTGCGCACCCGCTGTACGAGCAGCTGCTGTCGGCACACGTGGCGTGCCTCCGGATCGCCACGCCGGTGGACCAGTTGCCGAGGATCGACGCGCAGCTGGCGCAGTCGCAGAATGTGGTCGCGAAATACGCAGCCTTCGGACACAACAACATCGTCGCCGATGACAAAGAACTCGACCAGTTCATGTCGCACTATGTTTTATTGCTCTGTTCCTTCAAAGAACAGTTGCAACAGCATGTCCGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGATAGAGCAATCCTTGCAGAGTCTAACAGGAGTTTCGCCCGGAGAAGGTACAGGGGCAACAATGTCTGATGATGAAGATGACCAAGTAGACAGTGATGCCAATCTCTTTGATAGTAGTTTGGATGGGGCAGATAGCATGGGATTTGGCCCTCTTGTTCCTACAGAGAGTGAGAGGTCCCTCATGGAGCGAGTAAGACAAGAATTAAAGCATGAACTGAAAAATGGTTATAAGGAGAAAATTGTAGACATAAGAGAGGAAATTTTGCGCAAGAGACGAGCTGGGAAACTTCCTGGTGACACAACTTCTGTTCTTAAAGCTTGGTGGCTATCACATTCCAAGTGGCCTTACCCTACCGAGGAGGATAAGGCAAGGTTGGTTCAGGAAACTGGATTGCAATTAAAGCAGATCAATAATTGGTTTATCAATCAAAGGAAGAGGAATTGGCACAGCAATCCTTCAACTTCTACTGTCTTGAAGAGCAAGCGCAAAAGAAGCAATGCAGGTGATAACTGA 1266 0.5379 MAYHNHNLSQQDLPLHHFPNQSILPPEQQQQQQQQQQQQLPSSPDPNSKPPSDPHPLQTAPNWLNDALLRTHYTDTATATATVAATNNNVNGSNFLNLNPGASVAQWLARPVLHRHPGEVIDAGAGESLLEPADLKGGGGDGPGDAVNWQIGRWKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYAAFGHNNIVADDKELDQFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANLFDSSLDGADSMGFGPLVPTESERSLMERVRQELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWLSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKRSNAGDN 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00597 421 SMART KNOX1_2 152 196 IPR005540 GO:0003677|GO:0005634
Pumo9g00597 421 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 29 403 - -
Pumo9g00597 421 Pfam Homeobox KN domain 358 397 IPR008422 GO:0003677|GO:0006355
Pumo9g00597 421 ProSiteProfiles 'Homeobox' domain profile. 338 401 IPR001356 GO:0003677
Pumo9g00597 421 Pfam ELK domain 318 339 IPR005539 GO:0003677
Pumo9g00597 421 Pfam KNOX2 domain 211 260 IPR005541 GO:0003677|GO:0005634
Pumo9g00597 421 MobiDBLite consensus disorder prediction 401 421 - -
Pumo9g00597 421 MobiDBLite consensus disorder prediction 1 61 - -
Pumo9g00597 421 Gene3D - 339 400 - -
Pumo9g00597 421 SMART KNOX2_2 206 261 IPR005541 GO:0003677|GO:0005634
Pumo9g00597 421 FunFam homeobox protein knotted-1-like 3 isoform X1 339 400 - -
Pumo9g00597 421 Pfam KNOX1 domain 155 195 IPR005540 GO:0003677|GO:0005634
Pumo9g00597 421 SMART ELK_2 318 339 IPR005539 GO:0003677
Pumo9g00597 421 MobiDBLite consensus disorder prediction 1 43 - -
Pumo9g00597 421 CDD homeodomain 341 402 IPR001356 GO:0003677
Pumo9g00597 421 ProSiteProfiles ELK domain profile. 318 338 IPR005539 GO:0003677
Pumo9g00597 421 SUPERFAMILY Homeodomain-like 340 403 IPR009057 -
Pumo9g00597 421 SMART HOX_1 340 405 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00597 Pumo-Chr9 10041345 10046742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00597 1 415 Homeobox Transcription Factor Family AT5G25220 63.596 0.0 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pumo9g00597 KNOX2 3.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00597 - - gmx:100812596 695.656