Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00591 ATGGCCAGACCACAACAGCGTTACCGAGGTGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCAATATTGAAGACTAGGATATGGCTTGGTACATTTGAAACAGCTGATGATGCAGCTAGAGCCTATGATGAAGCAGCAAGGCTAATGTGTGGTGCAAGGGCAAGGACAAACTTCCCTTTCAACCCAAATGTGTCTCATTCATCATCTTCTAGTTCAAAGCTTCTCTCAGCAACTTTGACTGCAAAACTTCACAGGTGCTACATGGCTTCTTTGCAAATGACAAGGCAGGCTTTGGCATCATCTGAGTCTCAAAGAACACCTTCAGTAGTGCCAAATGTCACCTCCACAAGGACCACCACAACCACACCAATTAGCAACTTCAGTGTGAAGAGTGAGCAAACTCATGCAGTGTTGTTGCCACCACACAACAAGAGACCAGAGGAGGAGCAAGAGTCAGAGGCCAACAGGGGTGTCAAAAGGGTTAAAGCTGTGGAGAATGTTCCTCTACAATTCAAGCCTCTTGAGGAAGATCACATAGAGCAAATGATTGAGGAGCTTCTTGATTATGGATCTATTGAACTCTGCTCTGTCATTCCACCCCAGGCCCTTTAA 627 0.4673 MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETADDAARAYDEAARLMCGARARTNFPFNPNVSHSSSSSSKLLSATLTAKLHRCYMASLQMTRQALASSESQRTPSVVPNVTSTRTTTTTPISNFSVKSEQTHAVLLPPHNKRPEEEQESEANRGVKRVKAVENVPLQFKPLEEDHIEQMIEELLDYGSIELCSVIPPQAL 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00591 208 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Pumo9g00591 208 MobiDBLite consensus disorder prediction 104 128 - -
Pumo9g00591 208 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Pumo9g00591 208 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Pumo9g00591 208 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Pumo9g00591 208 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Pumo9g00591 208 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Pumo9g00591 208 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 146 - -
Pumo9g00591 208 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Pumo9g00591 208 FunFam Ethylene-responsive transcription factor 2 6 66 - -
Pumo9g00591 208 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00591 Pumo-Chr9 9938301 9939561 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00591 1 208 AP2-EREBP Transcription Factor Family AT5G25190 56.561 1.15e-76 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo9g00591 AP2 5.3e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00591 - - gmx:100785918 326.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00591 9 9938301 9939561 Pumo10g00133 10 1997794 1998971 PCT