Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00584 ATGACCGTGGTGGAGGATCATAGAATGGATGATCTCAGAGACCAGTTTCCTGTAGGAATGCGTGTTCTTGCTGTTGATGATGACTCAACATGTCTCAGGGTTCTGGAGACTCTGCTTCGAAGGTGTCAATACCATGTAACTGCCACTAAAAATGCAATAACGGCATTGAAGTTGTTGAGAGAAAACAAAACCAAGTTTGACCTGGTAATCAGTGATGTCCACATGCCAGACATGGATGGATTTAAGCTGCTTGAGCTTGTGGGGCTTGAGATGGACCTACCTGTCATAATGTTGTCTGTAAATGATGACCCTAAGATGGTGATGAAGGGAATTACACATGGAGCTTGTGATTATCTTCTGAAACCTGTTAGAATTGAGGAGCTACAGAACATTTGGCAGCATGTAGTCAGGAGGAAGAAGATTGATTCAAAGGAGCGGAACAAAACCAGCGACCATGACAAACCTAATGCTGATGGTTGCAATGGACGAGGGTCAGCAGCAACAGGAAATTCAGATCAAAATGGAAAGCCTTCCAAAAAGAGGAAGGATCAGGATGAAGATGATGATGAGGAGAATGAGAATGGCCATGACAATGAGGACCCATCAACTCAGAAGAAACCTCGAGTTGTTTGGTCTGTGGAGCTGCACCGCAAGTTTGTTTCAGCTGTTAATCAATTAGGCATTGACAAGGCTGTACCTAAAAAGATTCTTGACATGATGAATGTCGAAAAGCTTACAAGGGAGAATGTGGCCAGCCACCTCCAGAAATATAGACTTTACCTGAAAAGAATTAGCTGTGTGGCGAACCGACAGGCCAATATGGTGGCAGCCTTAGGCACCGCAGATTCATCCTATTTGAGAATGGGTTCTCTGAGTGGGGTTGGGCATTTTCAGACATTGACTGGTCCCCAACAATTTCATAACAATGCCTACAGACCCTTTCCACCTGGTGGAATGATTGGTAGATTGAACACCTCTGTTGGTCTGAATATGCATGGATTTTCCTCTTCAGAACCTCTTCAGTTGGGCCAGGCACAAAATTTAAACAACTCCATAAATGATCCACTTAAGTTCCAATCAGCCATGGCTTGTGGTAATCAAAATGGTCTCCATGGAATGCCAATGTCTACAGGTCTTGATCAATTGCAACATAATAAGGGTGTTAGTGTTAGTGTTAGTCCTATTCAAAACATGTCCCCTCTTATTGATGCTAGACCAACTTTTGCCCTGTCAAATAAACTCTCAGATCAAATACCAAATGTAACAATGGGTTACTCGCCCTCTCCGGCTTTGGACATCTCAAACAATGCCTTGGTATTGAAAGCAGACAGTGAAAACACACAAGGGAGTGGAGTATATGGGAATTTAACTTCAGTAGCCTCTCAGCATTCACAATTTTCTCTCCCTTTGTTGGATCATGGTAGGTGTAGTGATATTTGGTCAAGTTCTGTGCAATCACCTGGGACAAATTCTTTCCCTCCAAGTGAAACTTTGGAAGGGGGGAATCTGAGTGGTGCTTCATCCATTACTTCACTGTCTAACCAATCCAATGATTCACCGACAGATATGCACTCTCAAGGACTCATTTTTACAAACAATTCAGGACAAATGAGCAATAATGTGGTGCCATTTCAAGGGTGGGATGAGAATAATCAAGATAGTAGTTACCATTCAAATGTTATTGGTAACTCAATAGACTCTCTGATTGATCCAGAAGGCCACACTTCTATTAACTCAACCTACAATAGAAACCTGGATTTCAATTTTTGTGATCCTTTACAGATGAAGCATGATGGAATTATGGGATTGAGTGAGGAAAACTCATTGAAACAACAGCAGGGGTACAACATGAACCAGCAGAAGTCTCAAAACAGTCGCGCAGCTAATAATCTTGGTTCACTGGAAGACTTTATCAGTTCAATGATGAATCAGAAACAAGACAAGGTGAAATTCTCGGACGGATCATACTTATGCGACAATAATTACCCTGCCGGAAGATCCATGTGA 2007 0.423 MTVVEDHRMDDLRDQFPVGMRVLAVDDDSTCLRVLETLLRRCQYHVTATKNAITALKLLRENKTKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSVNDDPKMVMKGITHGACDYLLKPVRIEELQNIWQHVVRRKKIDSKERNKTSDHDKPNADGCNGRGSAATGNSDQNGKPSKKRKDQDEDDDEENENGHDNEDPSTQKKPRVVWSVELHRKFVSAVNQLGIDKAVPKKILDMMNVEKLTRENVASHLQKYRLYLKRISCVANRQANMVAALGTADSSYLRMGSLSGVGHFQTLTGPQQFHNNAYRPFPPGGMIGRLNTSVGLNMHGFSSSEPLQLGQAQNLNNSINDPLKFQSAMACGNQNGLHGMPMSTGLDQLQHNKGVSVSVSPIQNMSPLIDARPTFALSNKLSDQIPNVTMGYSPSPALDISNNALVLKADSENTQGSGVYGNLTSVASQHSQFSLPLLDHGRCSDIWSSSVQSPGTNSFPPSETLEGGNLSGASSITSLSNQSNDSPTDMHSQGLIFTNNSGQMSNNVVPFQGWDENNQDSSYHSNVIGNSIDSLIDPEGHTSINSTYNRNLDFNFCDPLQMKHDGIMGLSEENSLKQQQGYNMNQQKSQNSRAANNLGSLEDFISSMMNQKQDKVKFSDGSYLCDNNYPAGRSM 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00584 668 ProSiteProfiles Response regulatory domain profile. 21 136 IPR001789 GO:0000160
Pumo9g00584 668 Pfam Response regulator receiver domain 22 130 IPR001789 GO:0000160
Pumo9g00584 668 Gene3D - 20 199 - -
Pumo9g00584 668 PIRSF RR_ARR_type-B 1 667 IPR017053 GO:0003677|GO:0003700|GO:0009736
Pumo9g00584 668 PANTHER TWO-COMPONENT RESPONSE REGULATOR 20 420 IPR045279 GO:0009736
Pumo9g00584 668 SMART REC_2 20 132 IPR001789 GO:0000160
Pumo9g00584 668 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 262 IPR017930 -
Pumo9g00584 668 MobiDBLite consensus disorder prediction 141 158 - -
Pumo9g00584 668 CDD REC_typeB_ARR-like 22 136 - -
Pumo9g00584 668 FunFam Two-component response regulator 202 265 - -
Pumo9g00584 668 SUPERFAMILY Homeodomain-like 203 263 IPR009057 -
Pumo9g00584 668 MobiDBLite consensus disorder prediction 141 208 - -
Pumo9g00584 668 MobiDBLite consensus disorder prediction 482 526 - -
Pumo9g00584 668 NCBIfam myb-like DNA-binding domain, SHAQKYF class 206 259 IPR006447 GO:0003677
Pumo9g00584 668 SUPERFAMILY CheY-like 19 144 IPR011006 -
Pumo9g00584 668 Gene3D - 202 265 - -
Pumo9g00584 668 Pfam Myb-like DNA-binding domain 208 258 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00584 Pumo-Chr9 9779923 9785848 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00584 14 654 Response Regulator Gene Family AT2G25180 43.703 1.85e-135 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pumo9g00584 Response_reg 3.4e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00584 - K14491 gmx:100777171 1187.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00584 9 9779923 9785848 Pumo10g00137 10 2076438 2081092 PCT