Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00564 ATGCGGGTAGAAGAGGTAGGTGATCCTATATGCGCAAGTTCTGTTGCAAATGCAAACAACACCCTTAATGACAGCGCGTGGATTGCTTGTGCTAGAAACAGGTACTGGTTGTATCTGTGCGTGAAGGCACTTGGAAGCTCTGAAGGGCTTGAAATTTCGGGTCATGGTTGGTTGGTGAATACAGGACAATGTTACAGATGGCAGTGGGGTTGCCGGAAACCTTCTCTAGCGTTAGTCCCACTGAATGATATCGATAAGATATTAGATTGTGAGAAGCGTTCCGTGGTAGCGTGTGAAAGTGATGCAACGAAATTGGGGGTTCCAGAGGAAGAGTTTCTGAAAGCGTTCAAGAATCATCCAGGTCTAAAGACCAAAATAAACAACTTCCATCGTCATATAGCATCAGCCAGTAATCCTAATGAAGATTTTGTTGCCATTCGACCTGAATGGACTATGGTTGATCGAATACTTGCTTGCAGGGGCCATGATGATAAGACGGAATATCTTGTGAAGTGGAAAGAGCTTCCATATGATGAATGCTATTGGGAGCTCAAGTCAGACATCTCTGCATTTCAAACAGAAATAGAAAGATTTAACACATTTCAGTCTAGATCAAGGAATATTTTGTCTAGTAAGAAAAAACGTAGTGTTAAGGATGGTGCTGAATTGAATAAGCAGCAGAAAGAATTTCTACAGTACGAACATAGCCCTCAATTTCTTTCAGGGGGTGCACTGCATTCATATCAACTTGAAGGATTGAACTTCTTACGATTCTCATGGTCCAAGCAAACTCATGTTATACTTGCTGATGAAATGGGACTTGGTAGCAAAACAATTCAGAGTATTGCTTTCCTAGCATCCCTTTTTGAAGAGAATGTTTCTCCACATCTGGTGGTTGCTCCACTTTCAACATTGCGAAACTGGGAACGTGAATTTGCAACTTGGGCACCTCAAATGAATGTTGTTATGTATTTTGGATCTGCCAAAGCTCGTGCTTTTATTAGAGAGTATGAGTTTTACTTTCCAAAGAATCAAAAGAGGATCAAGAAAAAGAAATCTAGACAAATAGTTAATGAAAGCAAACAAGAAAGGATAAAGTTTGATGTCCTTTTGACATCATATGAGACTATAAATTCTGATACATCATCATTGAAACCTATAAAGTGGGAGTGCATGATAGTTGATGAAGGTCACCGTCTCAAAAACAAGGACTCTAAATTATTTTCTTCATTGAAGCAATATTCTAGCAAACATCGTGTGCTTTTAACAGGAACTCCTCTTCAGAACAATCTGGATGAACTTTTTATGCTAATGCACTTCCTTGATGCTGGAAAGTTTGGAAGTTTAGAGGAGTTCCAGGAAGAGTTTAAAGATATCAATCGAGAGGAGCAGATTTTGAGACTACATAAAATGTTGGCACCACATCTCTTGCGAAGAATGAAGAAAGATGTCATGACTGAACTACCTCCAAAAAAGGAACTTATTCTACGTGTTGAATTATGCAGCAAACAGAAAGAATATTACAAGGCAATTTTGACCCGTAATTATCAGATATTAACCCGCCAAGGTGGTGCACAAATTTCTCTTATCAATGTTGTTATGGAACTGCGTAAGCTCTGTTGTCATCCCTATATGTTACAAGGAGTTCAACCAGATCTTAATGATGCAAAAGAATCATACAAGCAATTGCTTGAATCATCTGGGAAGTTGCAGTTGTTGGATAAGATGATGGTGAAGCTTAAAGAGCAAGGGCATAGAGTTCTCATATATTCCCAATTTCAGCACATGTTGGATTTGCTTGAAGATTACTGTTTTTACAAGCATTGGCAGTATGAGAGGATAGATGGCAAGGTTGGAGGAGCTGAAAGACAAGTACGGATAGATCGGTTTAATGCTAAAAATTCTTCAAGATTTTGTTTTCTTCTTTCTACTAGAGCTGGGGGATTGGGGATAAACCTTACAACAGCTGACACAGTTATTATATATGACAGTGATTGGAATCCTCATTCTGATTTACAAGCTATGGCCAGAGCTCATCGACTTGGACAAACTAACAAGGTGATGATTTATAGGCTTATAACAAGGGGAACAATTGAGGAAAGGATGATTCAGATTACAAAGAAGAAAATGGTGTTAGAACACCTGGTTGTAGGGAGGCTAAAGGCTAAAAACATTAACCAGGAAGAGTTAGATGATATTGTAAGGTATGGCTCAAAGGAGTTATTTGCTTATGAGAATGATGAAATGGGCAAATCTCGCCAAATTCATTATGATGATGATGCAATAGACAGATTGCTGGATCGTGATCAAGTTGGAGATGAAAAGGCTGCTGTGGATGGTGAAGATGAAGATGGTTTTCTGAAGGCCTTTAAGGTGGCAAATTTTGAATACGTTGAGGCAGAGGAGGTGACGCAAAAAGCAAAGGAGAATCAATCCTCTGCGACTAGTTCAAATGGAACAAACTATTGGGAGGAGTTATTGAGAGATAAATATGAAGATCATAAAGTTGAAGAATTAAATTCCCTGGGCAAAGGGAAGCGAAGCCGTAATAAATGGCTGGTATGTCAATCAGGTGGGGACGGTTTTAGTGGTTTGGGAGATGTAAGCTCTGATGGTGAAGATAACAATTACGAAGAGGATCTTACTGATGATGATTTAAATTCAACTGAAACTACTACTACTAGAAGGCCTCACAAAAAGAAAGCTCGTGCAGATAGCATGGAGCCACTTCCTTTAATGGAAGGTGAAGGAAGATTTCTGAAAGTACTTGGTTTTAATCAAAATCAAAGGGCTGCATTTGTTCAAATTTTGATGAGGTTTGGGGTTGGTGATTTTGATTGGAAAGAGTTTACTTCCCGCATGAAACAGAAGAGCTATGAAGAAATCATGGAGTATGGAAAACTTTTCTTGTCTCATATTGCAGAAGACATAACTGATTCCCCTACATTCACAGATGGTGTTCCAAAAGAAGGACTTCGAATACAAGATGTACTTGTAAGGATTGCAGTTCTGCTCTTGATGAGGGACAAAGTGAAGTTTGCATCAGAAAATCCTCGAACTCGGCTTTTTTCAGATGATATCTTATTACGCTATGCTGGTTTGAAGGGTGCAAAAATATGGAAGGAGGAGCATGATTTCATGTTACTGCATGCTGTCTTGAAGCATGGCTATGGAAGGTGGCATGATATTGTTGATGATAAGGATCTGAAGATTCAGAAGGTCATCTGTCAGGAGTTGAATATTCCATTTACAGATTTACCAGTTCAAGGACAAGTTTCCTCTCAAGTGTATAATAGTGCAAATATGACAAATGTGGAGTCCAGCTGCAACCCGTCTGTTGAAAATGGTAGGAGTGACATAGTGGCTGATGGTGCAAATATGACAAATGTGCAATCGAGCTGCAACCAATCTAAGGAGAGTGGTGTGAGTGACATCGCTGCTGAAGGTGCACATGGTTCTGGTGATACTGGGAACCAAGCACAGTTATGTCAAAAGTCCTCCATATTGCATCAGTTTAAAGACATGCAGAGAAGACAGATTGAGTTTATAAAAAAAAGGTTTCTTCTCTTGGAAAAAGGTCTCAATGCTGAGTACCAGAAAGAATACTTCAGTGATTTGAAAGCAAATGAGGTGGAAAATGTCGAACTTAAAGCTGAACCCAAGGCTACAAATGTACCAAGTTATACATTAGGGGAGATTGACACTCAAATGATTCGATCAACTGCCTCGCGTCGAAGCAATAGGTTCAGAAGAAATTTCTATTTCTGCATATGA 3774 0.3932 MRVEEVGDPICASSVANANNTLNDSAWIACARNRYWLYLCVKALGSSEGLEISGHGWLVNTGQCYRWQWGCRKPSLALVPLNDIDKILDCEKRSVVACESDATKLGVPEEEFLKAFKNHPGLKTKINNFHRHIASASNPNEDFVAIRPEWTMVDRILACRGHDDKTEYLVKWKELPYDECYWELKSDISAFQTEIERFNTFQSRSRNILSSKKKRSVKDGAELNKQQKEFLQYEHSPQFLSGGALHSYQLEGLNFLRFSWSKQTHVILADEMGLGSKTIQSIAFLASLFEENVSPHLVVAPLSTLRNWEREFATWAPQMNVVMYFGSAKARAFIREYEFYFPKNQKRIKKKKSRQIVNESKQERIKFDVLLTSYETINSDTSSLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSSKHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINREEQILRLHKMLAPHLLRRMKKDVMTELPPKKELILRVELCSKQKEYYKAILTRNYQILTRQGGAQISLINVVMELRKLCCHPYMLQGVQPDLNDAKESYKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCFYKHWQYERIDGKVGGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLTTADTVIIYDSDWNPHSDLQAMARAHRLGQTNKVMIYRLITRGTIEERMIQITKKKMVLEHLVVGRLKAKNINQEELDDIVRYGSKELFAYENDEMGKSRQIHYDDDAIDRLLDRDQVGDEKAAVDGEDEDGFLKAFKVANFEYVEAEEVTQKAKENQSSATSSNGTNYWEELLRDKYEDHKVEELNSLGKGKRSRNKWLVCQSGGDGFSGLGDVSSDGEDNNYEEDLTDDDLNSTETTTTRRPHKKKARADSMEPLPLMEGEGRFLKVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKSYEEIMEYGKLFLSHIAEDITDSPTFTDGVPKEGLRIQDVLVRIAVLLLMRDKVKFASENPRTRLFSDDILLRYAGLKGAKIWKEEHDFMLLHAVLKHGYGRWHDIVDDKDLKIQKVICQELNIPFTDLPVQGQVSSQVYNSANMTNVESSCNPSVENGRSDIVADGANMTNVQSSCNQSKESGVSDIAAEGAHGSGDTGNQAQLCQKSSILHQFKDMQRRQIEFIKKRFLLLEKGLNAEYQKEYFSDLKANEVENVELKAEPKATNVPSYTLGEIDTQMIRSTASRRSNRFRRNFYFCI 1257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00564 1257 SMART DUF1087_2 798 863 IPR009463 -
Pumo9g00564 1257 Gene3D - 141 200 - -
Pumo9g00564 1257 CDD SF2_C_SNF 567 693 - -
Pumo9g00564 1257 MobiDBLite consensus disorder prediction 889 905 - -
Pumo9g00564 1257 MobiDBLite consensus disorder prediction 864 905 - -
Pumo9g00564 1257 SMART ultradead3 241 455 IPR014001 -
Pumo9g00564 1257 Gene3D - 237 488 IPR038718 -
Pumo9g00564 1257 SMART DUF1086_2 873 1028 IPR009462 GO:0003677|GO:0006338
Pumo9g00564 1257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 481 755 IPR027417 -
Pumo9g00564 1257 Pfam Chromo (CHRromatin Organisation MOdifier) domain 152 199 IPR023780 -
Pumo9g00564 1257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 201 479 IPR027417 -
Pumo9g00564 1257 CDD CD2_tandem 149 198 - -
Pumo9g00564 1257 Gene3D - 995 1133 - -
Pumo9g00564 1257 SMART chromo_7 149 203 IPR000953 -
Pumo9g00564 1257 SUPERFAMILY Chromo domain-like 136 202 IPR016197 -
Pumo9g00564 1257 Pfam Helicase conserved C-terminal domain 569 682 IPR001650 -
Pumo9g00564 1257 Pfam SNF2-related domain 265 546 IPR000330 GO:0005524|GO:0140658
Pumo9g00564 1257 ProSiteProfiles Chromo and chromo shadow domain profile. 151 213 IPR000953 -
Pumo9g00564 1257 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 257 444 IPR014001 -
Pumo9g00564 1257 Pfam CHD subfamily II, DUF1087 800 850 IPR009463 -
Pumo9g00564 1257 Coils Coil 449 469 - -
Pumo9g00564 1257 MobiDBLite consensus disorder prediction 872 886 - -
Pumo9g00564 1257 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 107 1206 - -
Pumo9g00564 1257 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 572 731 IPR001650 -
Pumo9g00564 1257 SMART helicmild6 598 682 IPR001650 -
Pumo9g00564 1257 Gene3D - 489 713 IPR027417 -
Pumo9g00564 1257 Pfam CHD subfamily II, SANT-like domain 891 1025 IPR009462 GO:0003677|GO:0006338
Pumo9g00564 1257 Pfam CHDCT2 (NUC038) domain 1038 1071 IPR012957 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00564 Pumo-Chr9 9475334 9494627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00564 267 743 RAD5 or RAD16-like Gene Family AT1G02670 23.878 3.90e-30 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pumo9g00564 SNF2_N 3e-62 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00564 K11643 - gmx:100779829 1888.62