Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00563 ATGATGGCAAACTACCACCGCAACAACGTCGAAAACGTCGTCCTCGGCCACCACCACCACCACCACCACCACCGTTCCAAGTCCGCCTCCGTCGCCGGCCACTTCCGCCTATGGAACGCCGCCTCCTTCCGCCGCCTCGTCTTCGACGCCGTCAGCTGCGGCGCCAGCTCCCGCTACGCCGCGAGATCCGACACCTCCTCCGAGAAACAGCACCAGCAGCAAAAACAACCTAAGACGAAGCCGAACAGTAATAATGCGAAGTCGGAGAAGCTCTCGGATCTGCTGAGCATTGCGGAGGCCGAAGCTGACGTGGAAACGAAGAAGAAGGAGGAGAAGCTCGAGGAGCTGAAGTGCCTCGTGAAGGAGCTTCAGCACGAAGAAGAGGATTCGACGAAGAAAAAAGAAGCTGCGGCGAAAGTGAGGTTGTTAGCGAAAGAGGATTTGGAGGTTAGAGGAACTCTCGCTATGCTTGGAGCCATTCCTCCTCTCGTCTCAATGCTCGAAGAAAACGACGTCGATTCGCTCGTCGCTTCGCTCTACGCGCTGCTCAACCTCGGAATCGGAAACGACGCGAATAAAGCAGCTATTGTGAAAGTTGGGTCTGTTGAGAAGATGCTTAAGTTGATTGAGTCTCCAGATGGTTTAGATTCTTCGGTTTCTGAAGCAATTGTTGCAAATTTCCTTGGATTAAGTGCTTCGGATTCGAATAAGCCCATAATAGGTTCTTCGGCTTCAATTTCTTTCTTAGTTAGAACCCTTCAGAGTTTAGATGATAAGAGTAGTCCCCAAGCCAAGCAAGATGCTCTCCGAGCACTGTACAATCTTTCAATCTTCCCAGGCAATGTTGCATTCATTTTGGAGACCGATTTGGTTGTGTTTCTGGTGAACTCAATAGGGGACATGGAGGTAACTGAAAGAACCCTTGCAATTCTCAGCAATATAGTGTCGACCCGAGAGGGTAGAAAGGCAATCAGCGCTGTGCCGGATTCGATTCCAATCTTGGTGGATGTGTTGAATTGGACGGATTCGCCAGAATGCCAGGAGAACGCGTCGTACATTTTGATGGTTATGGCACACAAGTCCTATGGTGACAAGCAGGCCATGATTGAGGCAGGGATTGCGTCATCACTGCTCGAGTTGTCCCTTTTGGGTTCCACATTGGCTCAGAAAAGGGCCTCAAGGATATTGGAGATTTTGAGGGTGGACAAAGGGAAGCAGGTTTCTGGGAGCTATGGCTTGGGTGCAGCTGTCTCTGCCCCTATTTGCGGCTCTTCTTCCGCGAAGCCGGATGGAGGAGGAAGAGAGTGTTTTGAGGAGGATGAAGAAATGATGAGCGAGGAGAAGAAAGCAGTGAAGCAGTTAGTCCAGCAGAGTTTGCAGAACAACATGAGGAAAATTGTAAAGAGGGCCAACTTGCCTCAAGATATCGTGCCATCAGATCATTTTAAGTCGCTCACTTCAAGTTCTACTTCAAAGAGCCTGCCATTTTGA 1491 0.5023 MMANYHRNNVENVVLGHHHHHHHHRSKSASVAGHFRLWNAASFRRLVFDAVSCGASSRYAARSDTSSEKQHQQQKQPKTKPNSNNAKSEKLSDLLSIAEAEADVETKKKEEKLEELKCLVKELQHEEEDSTKKKEAAAKVRLLAKEDLEVRGTLAMLGAIPPLVSMLEENDVDSLVASLYALLNLGIGNDANKAAIVKVGSVEKMLKLIESPDGLDSSVSEAIVANFLGLSASDSNKPIIGSSASISFLVRTLQSLDDKSSPQAKQDALRALYNLSIFPGNVAFILETDLVVFLVNSIGDMEVTERTLAILSNIVSTREGRKAISAVPDSIPILVDVLNWTDSPECQENASYILMVMAHKSYGDKQAMIEAGIASSLLELSLLGSTLAQKRASRILEILRVDKGKQVSGSYGLGAAVSAPICGSSSAKPDGGGRECFEEDEEMMSEEKKAVKQLVQQSLQNNMRKIVKRANLPQDIVPSDHFKSLTSSSTSKSLPF 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00563 496 Coils Coil 437 457 - -
Pumo9g00563 496 Gene3D - 108 253 IPR011989 -
Pumo9g00563 496 SUPERFAMILY ARM repeat 113 400 IPR016024 -
Pumo9g00563 496 SMART arm_5 147 187 IPR000225 GO:0005515
Pumo9g00563 496 SMART arm_5 278 316 IPR000225 GO:0005515
Pumo9g00563 496 SMART arm_5 320 359 IPR000225 GO:0005515
Pumo9g00563 496 SMART arm_5 233 277 IPR000225 GO:0005515
Pumo9g00563 496 SMART arm_5 189 232 IPR000225 GO:0005515
Pumo9g00563 496 Gene3D - 254 410 IPR011989 -
Pumo9g00563 496 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 30 496 - -
Pumo9g00563 496 MobiDBLite consensus disorder prediction 59 88 - -
Pumo9g00563 496 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 158 200 IPR000225 GO:0005515
Pumo9g00563 496 Coils Coil 95 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00563 Pumo-Chr9 9424503 9426756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00563 126 429 U-box Gene Family AT1G24330 30.341 2.02e-29 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00563 - - gmx:100788575 761.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00563 9 9424503 9426756 Pumo10g00144 10 2169143 2171272 PCT