Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00556 ATGTCAGGCGCTCCCCACATCCTCCTCGTGCTTCTCCTCATTGCCACCTTCTCTCCCTCAACAATCCACTCCCTCTTCTTCAACATAACCAACTTCGACGACCCTGCAGTCGCAACCGCCATATCCTACGAGGGTGACGGAAGATCCACCAACGGCTCCCTCGACCTGAACAAAGTCAGCTACCTCTTCCGCGTCGGAAGGGCCATATACTCCCAGCCCCTCCGCCTGTGGGACCCCTCCTCCGACCTCGCCGCCGACTTCACCACGCGCTTCACCTTCTCCATCGAGAGGGTGAACTTCAATGACACCTCCTTTGGGGACGGCTTCGCGTTTTACTTGGCTCCTCTCGGCTACCGGATCCCGCCGAACTCCGCCGGCGGGACGTTCGGCCTCTTCAACGCCACCACCAACAGCAACCTCCCCGAGAACCACGTCGTGGCGGTGGAGTTCGACACGTTTGTCGGCTCCACCGACCCGCCGACGAAACACGTCGGCGTGGACGACAACTCCCTGACCTCGCCGGCTTTCGGCAACTTCGACATCGACAACAACCTCGGAAAAAAGTGCCACGCGCTGATCACCTACACCGCCTCCACTCAAAACCTCTTCGTTTCTTGGTCCTTCAAGGGAAAACCAACCACAAACAACAACAACGACAACAATTCTTCTTTTTCTTACCAGATTGACCTCAAGAAAATTCTCCCGGAGTGGGTCAACATTGGATTCTCAGCCTCAACCGGACTTTCCACCGAGAGAAACACTATCTATTCATGGGAGTTCAGCTCTACTTTGAATGGTTCCAGTTTTGCTGAGAGTGTGAAACAAAAACACAAAGGCTCAAAGCTTGTGTTGATTGTTGCTGTTGTTTGTCCACTGATTCTGCTCTTTGTGGCGGCGAGTGTTGCTGTTTTCTTGATAAGGAAAAAGAGAAGAAGAGACGATTGCATGTTATATGAAGTTGGCGATGACGGGCTAGGTCCCGCATCGGTTAAGTTTGATTTGGACAAAGCAGCCATCCCAAGAAGATTCGAGTACAAGGAACTCGTGGACGCCACCAATGGTTTTTCAGATGACAGAAGGCTCGGACAAGGAGCTTCAGGGCAAGTCTACAAAGGCGTCTTGAGCTACCTAGGAAGAGTCGTCGCCGTGAAGAGAATCTCCGCGGACTTCGAGAATTCGGAGAGAGTGTTCACCAACGAGGTGAGAATAATAAGCCGTTTGATCCACAAGAACCTGGTCCAGTTCATAGGGTGGTGCCACGAAGAAGGCGAGTTTCTGTTAGTCTTCGAGTACATGCCGAACGGAAGTCTCGATTCTCATTTGTTTGGGAACAAGAGGGTGTTGGAGTGGCAGACAAGGTACAAGATCGTGTTAGGCGTGGTGACCGCGCTTCAGTATCTTCACGAAGACGCAGAGCAGTGTGTTCTTCACAGGGATATAAAATCTGCAAATGTGTTGTTGGACACGGAGTTTAACACCAAGGTGGGCGATTTCGGCATGGCGAAGTTGGTGGATCCGAGGTTGAGGACTCAGCGAACCGGAGTGGTCGGAACCTATGGATATTTGGCGCCAGAGTATGTTAATGTTGGGAGGGCGAGTAGGGAATCGGACATTTACAGTTTTGGAGTTGTGGCTTTGGAGATTGCGAGTGGGAGGAGGACTTACCAGGACGGGGAGTTTCACGTTTGCTTGATGAATTGGGTGTGGCAGCTTTATGTGGAAGGGGAGATTCTGAGGGCTGCGGATGAGAAATTGAACAATGAGTTTGAGGTGGATGAAATGAAGAGTTTGCTTGTGGTGGGACTGTGGTGTACGAATCCGAATGATAAAGAGAGGCCCAAGGCTGCGCAGGTGATCAAGGTTTTGCAGCTTGAAGCCCCTTTGCCTGTGCTCCCGCTTGATATGTATGAACGTGCTCCTCCTATGGAAATGATTAGGATGCCACATCATCATAATAATAATAATTACTCGGGCCAATCGCCACCCATTACTAATAGTCTTGTGAGTGTGGGACGATGA 2019 0.5131 MSGAPHILLVLLLIATFSPSTIHSLFFNITNFDDPAVATAISYEGDGRSTNGSLDLNKVSYLFRVGRAIYSQPLRLWDPSSDLAADFTTRFTFSIERVNFNDTSFGDGFAFYLAPLGYRIPPNSAGGTFGLFNATTNSNLPENHVVAVEFDTFVGSTDPPTKHVGVDDNSLTSPAFGNFDIDNNLGKKCHALITYTASTQNLFVSWSFKGKPTTNNNNDNNSSFSYQIDLKKILPEWVNIGFSASTGLSTERNTIYSWEFSSTLNGSSFAESVKQKHKGSKLVLIVAVVCPLILLFVAASVAVFLIRKKRRRDDCMLYEVGDDGLGPASVKFDLDKAAIPRRFEYKELVDATNGFSDDRRLGQGASGQVYKGVLSYLGRVVAVKRISADFENSERVFTNEVRIISRLIHKNLVQFIGWCHEEGEFLLVFEYMPNGSLDSHLFGNKRVLEWQTRYKIVLGVVTALQYLHEDAEQCVLHRDIKSANVLLDTEFNTKVGDFGMAKLVDPRLRTQRTGVVGTYGYLAPEYVNVGRASRESDIYSFGVVALEIASGRRTYQDGEFHVCLMNWVWQLYVEGEILRAADEKLNNEFEVDEMKSLLVVGLWCTNPNDKERPKAAQVIKVLQLEAPLPVLPLDMYERAPPMEMIRMPHHHNNNNYSGQSPPITNSLVSVGR 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00556 672 CDD lectin_legume_LecRK_Arcelin_ConA 27 264 IPR001220 GO:0030246
Pumo9g00556 672 FunFam L-type lectin-domain containing receptor kinase IX.1 340 431 - -
Pumo9g00556 672 PANTHER - 50 627 - -
Pumo9g00556 672 Gene3D Transferase(Phosphotransferase) domain 1 432 627 - -
Pumo9g00556 672 MobiDBLite consensus disorder prediction 649 672 - -
Pumo9g00556 672 Gene3D - 23 275 - -
Pumo9g00556 672 MobiDBLite consensus disorder prediction 650 672 - -
Pumo9g00556 672 ProSitePatterns Legume lectins beta-chain signature. 146 152 IPR019825 -
Pumo9g00556 672 Pfam Legume lectin domain 26 265 IPR001220 GO:0030246
Pumo9g00556 672 FunFam L-type lectin-domain containing receptor kinase IX.1 432 632 - -
Pumo9g00556 672 ProSiteProfiles Protein kinase domain profile. 355 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g00556 672 Gene3D Phosphorylase Kinase; domain 1 340 431 - -
Pumo9g00556 672 SUPERFAMILY Protein kinase-like (PK-like) 340 642 IPR011009 -
Pumo9g00556 672 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 264 IPR013320 -
Pumo9g00556 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Pumo9g00556 672 Pfam Protein kinase domain 356 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g00556 672 ProSitePatterns Protein kinases ATP-binding region signature. 361 384 IPR017441 GO:0005524
Pumo9g00556 672 SMART serkin_6 355 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g00556 672 ProSitePatterns Legume lectins alpha-chain signature. 234 243 IPR000985 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00556 Pumo-Chr9 9327684 9330221 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00556 7 635 Receptor kinase-like Gene Family AT5G10530 44.131 1.51e-180 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Pumo9g00556 Pkinase 2.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00556 - - gmx:100791220 1180.62