Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00554 ATGTCGTCGGTGTACGTTCTAGAACCTCCGACGAAGGGGAAAGTGGTGGTGAACACCACGCGCGGCCCCTTGGACATTGAGCTTTGGCCGAAAGAGGCTCCGAAAGCCGTGAGGAACTTCGTGCAGCTCTGCCTCGAAAACTATTACGACAACACCATCTTCCACCGCATCATCAAGGACTTCCTCGTCCAAGGCGGCGACCCCACCTCCTCCGGCACCGGAGGTGAAAGCATTTATGGTGGTGCTTTTGCTGATGAGTTTCATTCACGTCTGAAATTCAAGCACAGAGGAATAGTTGCAATGGCAAATTCTGGAACTCCGAATTCCAATGGAAGTCAGTTTTTCATCACTCTCGACCGTTGTGACTGGCTTGATCGCAAGCATACCATTTTTGGAAAAGTGACGGGAGATACAATGTATAATCTTTTGAGACTGGGTGAACTTGAAACCGATAAGAATGACCGGCCTTTAGATCCACCAAAGATATTATCAGTTGAGGTGTTATGGAATCCATTTGAAGATATTGTTCCGAGAACGCTTCAAAAATCTCAGATTGAAGCTAAAGCTGATACAGAAAATAAAGAGTCAGGGAAGAAAGGCATAAAAAAATTGAACTTGCTTTCATTTGGGGAAGAAGCTGAAGAAGAGGAAAAGGAATTGGCATCGGTGAAGAAAAAGATTAAGAGCAGTCACGATGTCTTGAATGATCCTCGTCTTCTAAAGGAAGAAACTCTTAATAATGAACTGAGTTCATCAAGAAGAGATCTGCAGTTATCTGTAAGGGATGCACTTAACTCAAAGAAAGAAGAGACTCAGAAAGATTCAGAAGCTGGTAACATGGCTCGTCTTGATTCCAGTGATGACGATGAAGCAGATTTTGATGCAAGAATGCGCATGCAAATACTCAAAAAGCGGAAGGAGTTGGGTGATCTCCCTCCAAAGCCAAAGTTGCAAAATGGAAGGTCCAGTCCAGAGAACCATGATACATCAGCAGCCAGGTCCAATGCTGTAAGTGTTGATGAGGATCAACCAAAGGTGGAAAAGTTGTCCTTGAAGAAAAAGGGTGTAGGATCTGAAGCAAGAGCTGAACGAATGGCTAATGCAGATGCAGATCTGCAACTACTGAATGTAGCTGAGAGAGGAAGACAATTGCAGAAGCAGAAGAAACGCAGACTTCAAGGGCGTGAAGATGAAGTTCTGGCAAAACTTGAAAAATTTAAGAAGTCTTTATCAGCAAAGGAGACACCGCCAACTGATGAATCTGGAGACGTTAATAATGAGGAATTGTCTGACTGGAAAGGTGTTAGTTTAAAATTTGCCCCCAAGACCGGCAAGGACCACATGTCTCGCAATGAGGACCCAAATGATTATGTTGTGCACGATCCTCTTTTGGAGAAGGGGAAAGAGAAGTTCAATAGGATGATAGCCAAACAAAAGAGACGAGAACGAGAGTGGGCTGGGAGATCCCTTACCTGA 1476 0.4431 MSSVYVLEPPTKGKVVVNTTRGPLDIELWPKEAPKAVRNFVQLCLENYYDNTIFHRIIKDFLVQGGDPTSSGTGGESIYGGAFADEFHSRLKFKHRGIVAMANSGTPNSNGSQFFITLDRCDWLDRKHTIFGKVTGDTMYNLLRLGELETDKNDRPLDPPKILSVEVLWNPFEDIVPRTLQKSQIEAKADTENKESGKKGIKKLNLLSFGEEAEEEEKELASVKKKIKSSHDVLNDPRLLKEETLNNELSSSRRDLQLSVRDALNSKKEETQKDSEAGNMARLDSSDDDEADFDARMRMQILKKRKELGDLPPKPKLQNGRSSPENHDTSAARSNAVSVDEDQPKVEKLSLKKKGVGSEARAERMANADADLQLLNVAERGRQLQKQKKRRLQGREDEVLAKLEKFKKSLSAKETPPTDESGDVNNEELSDWKGVSLKFAPKTGKDHMSRNEDPNDYVVHDPLLEKGKEKFNRMIAKQKRREREWAGRSLT 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00554 491 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 22 167 IPR002130 GO:0000413|GO:0003755
Pumo9g00554 491 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 49 66 IPR020892 GO:0003755|GO:0006457
Pumo9g00554 491 MobiDBLite consensus disorder prediction 304 429 - -
Pumo9g00554 491 Gene3D - 2 182 IPR029000 -
Pumo9g00554 491 SUPERFAMILY Cyclophilin-like 14 181 IPR029000 -
Pumo9g00554 491 CDD cyclophilin_CeCYP16-like 8 179 - -
Pumo9g00554 491 Coils Coil 206 233 - -
Pumo9g00554 491 MobiDBLite consensus disorder prediction 443 461 - -
Pumo9g00554 491 MobiDBLite consensus disorder prediction 340 366 - -
Pumo9g00554 491 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 15 167 IPR002130 GO:0000413|GO:0003755
Pumo9g00554 491 MobiDBLite consensus disorder prediction 264 292 - -
Pumo9g00554 491 MobiDBLite consensus disorder prediction 319 337 - -
Pumo9g00554 491 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 98 113 IPR002130 GO:0000413|GO:0003755
Pumo9g00554 491 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 125 IPR002130 GO:0000413|GO:0003755
Pumo9g00554 491 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 126 141 IPR002130 GO:0000413|GO:0003755
Pumo9g00554 491 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 54 66 IPR002130 GO:0000413|GO:0003755
Pumo9g00554 491 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 28 43 IPR002130 GO:0000413|GO:0003755
Pumo9g00554 491 MobiDBLite consensus disorder prediction 469 491 - -
Pumo9g00554 491 FunFam Peptidyl-prolyl cis-trans isomerase CWC27 homolog 1 179 - -
Pumo9g00554 491 MobiDBLite consensus disorder prediction 390 414 - -
Pumo9g00554 491 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 11 218 IPR044666 -
Pumo9g00554 491 MobiDBLite consensus disorder prediction 442 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00554 Pumo-Chr9 9264626 9271496 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00554 9 172 U-box Gene Family AT5G67530 46.951 1.28e-42 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00554 K12737 - gmx:100793148 881.708
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00554 9 9264626 9271496 Pumo9g00554 9 9264626 9271496 ECH