Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00553 ATGAAATCAGCACCAGATTATAGTTCAGTGTACGTAATTTCAAAAGGGAAGATAGTGGGAGCTCGACCAGCAATACGACCAATGGTAAACGTGGTTGCACCACCAAAAGAAAATGGAGTAAGGTCACATTCACAAAGAAGAGGGAGCACCAATGGAAGATCAGAAAGATCACCTCTACTTGAAATGCCAAGGTGTTCTTCAGCTAGTCAGTCAATGGATCATCAGAGGTCACTATTTAACCACAGCTCGGGTGAAAGTGACTCTTCAGGGTCACGTAAGTTTGGGTCAATGGATGCAAATAAAAAAGATTGTGATTTAGGCTCTCCATCTGCAGATTCCCAATTCTCAGGAGATATGGAAGCTGAGATGAAAATGTTGAGGCTCAAACTGAAGCAAACTATGGACATGTACAGCTCAGCATGCAAAGATGCAATCTCAGCCCAAAACAAGGCTAAAGAGATTAACCAATGGAAGGAGGAACGTATAGCTGAGGAAGCTACTAAGTTGTCTAAAGAGGCAGCTCTTGCAATGGTAGAAAAGGAGAAATTTAAAGCCCAAGCTGCATTGGAAGCAGCTGAGGAAGCCATTAAGATGGTTGAAGAGGAAGCAAACAAAAGATTTCATGCAGAGATGAAGGCCAGGAGAGAGGCAGAAGAGAAGGATCGAGCATTGAATCAGTTGCTTAGCAACGATACTCGATACAGAAAATACAGTATAAACGATATTGAAGAGGCCACTCAGAAGTTCTCCCCATCAATGAAAGTAGGTGAAGGTGGATATGGACCTGTGTTTAAAGGCCAACTTGATCACACCCCGGTTGAGATATTATGCAGCATAAGGCATCCTAACATGGTCCTCCTCCTTGGCGCGTGTCCCGAGTACGGATGCTTAGTGTATGAGTACTTGGAGAATGGTAGCTTAGAAGATAGATTGTTGATGAAAAATGATAGCCCTCCTATTCCATGGTGGAAACGTTTTGAAATAGCTGCTGAGGTTGCAACTGCACTCCTTTTCCTTCACCAAACAAAGCCAGAGCCAATTGTGCACCGGGACCTTAAACCTGCCAACATTCTCTTGGACAAAAACTTTGTCAGCAAAATAAGTGATGTTGGTCTTGCAAGATTAGTGCCACCTTCTGTGGCTGATTCTGTCACACAATATCACTTGACTGCAGCTGCTGGAACCTTTTGTTACATTGATCCTGAGTACCAACAAACAGGAAAGTTGACAAAAAAATCAGATATATATTCCTTGGGGATAATGCTACTACAAATCATCACAGCCAAGCCTGCAATGGGGCTTGCTCACCATGTTAGGAGGGCAATTGAGAATGGAACATTTTCAGATATGCTTGATCCTGAGGTCACTGATTGGCCACTTGAAGAGGCTCTAGCATTTGCCAAACTCTCATTGAGTTGTGCAGAACTCAGCAAAAAGGACAGGCCTGATCTTGCAACAGTGGTGATGGGTACTAAAAAGAACACATGGAAGTCTGTGGTCTTGATCTTAAGTTGTTACAAGGTTAAGATTGCCTTGGAGGAATCAGAGAAACAGGTTTTAAAACAAGGTTCTTTCCAGAGGCTATGTCTATCTGATGTGAGCAATTCAAGCTCCACTCAGGCCATTGAGGATATTTCAATTTCCTTTGCTGGCTCAAAACTCTATGCATTCACACTTGAGGAGCTAAGGGAAGCAACAAACAGTTTCTCATGGAGTAATATGCTAGGTGAAGGAGGGTTTGGACCTGTGTACAAGGGTTTTGTTGATGACAAACTTAGGCCTGGTTTGAAGGCTCAGACTGTAGCTGTGAAAAGGTTGGACTTGGATGGCTTGCAAGGTCACAGGGAGTGGCTGGCAGAGATTATATTTCTTGGACAGCTAACGCATCCACATCTAGTCAAGTTAATTGGGTACTGTTATGAGGATGAACACAGGCTTTTGATGTATGAATACATGCCAAGAGGCAGCTTGGAGAATCAACTCTTCAGAAGATACTCTGCTGCCATGCCATGGTCAACCAGAATGAAAATTGCATTGGGAGCTGCCAAGGGTCTTGCCTTCCTTCATGAAGGAGATAAGCCTGTAATATACCGCGATTTCAAAGCTTCAAACATTTTACTAGACTCAGATTTCACAGCTAAACTCTCAGATTTTGGACTAGCTAAGGATGGCCCTGACGGGGAAGACACACATGTAACAACACGCATAATGGGAACACAAGGTTATGCTGCTCCTGAGTACATCATGACAGGTCACCTTACAACCAAGAGCGATGTGTATAGCTATGGAGTGGTGCTGTTGGAATTGCTTACAGGAAGACGAGTAGTGGATAAATCGCGGTCGAATGGAGGGAAGAGCTTGGTGGAATGGGCAAGGCCTTTGTTGAGAGATCAGAAAAAGGTGTATAATATCATAGATCGTAGACTAGAAGGGCAATTTCCCAAGAAAGGAGCCATGAAAGTTGCTATGTTGGCTTTTAAATGCTTGAGTCATCACCCAAATGCAAGGCCCACTATGAGTGATGTGGTGAAGGTATTGGAGCCACTTCAGGACTTTGATGATGTTTTCATTGGACCATTTGTGTATGTTGCCGTAAGTGAAAATGGTGACAAACATAAAATATAG 2625 0.4331 MKSAPDYSSVYVISKGKIVGARPAIRPMVNVVAPPKENGVRSHSQRRGSTNGRSERSPLLEMPRCSSASQSMDHQRSLFNHSSGESDSSGSRKFGSMDANKKDCDLGSPSADSQFSGDMEAEMKMLRLKLKQTMDMYSSACKDAISAQNKAKEINQWKEERIAEEATKLSKEAALAMVEKEKFKAQAALEAAEEAIKMVEEEANKRFHAEMKARREAEEKDRALNQLLSNDTRYRKYSINDIEEATQKFSPSMKVGEGGYGPVFKGQLDHTPVEILCSIRHPNMVLLLGACPEYGCLVYEYLENGSLEDRLLMKNDSPPIPWWKRFEIAAEVATALLFLHQTKPEPIVHRDLKPANILLDKNFVSKISDVGLARLVPPSVADSVTQYHLTAAAGTFCYIDPEYQQTGKLTKKSDIYSLGIMLLQIITAKPAMGLAHHVRRAIENGTFSDMLDPEVTDWPLEEALAFAKLSLSCAELSKKDRPDLATVVMGTKKNTWKSVVLILSCYKVKIALEESEKQVLKQGSFQRLCLSDVSNSSSTQAIEDISISFAGSKLYAFTLEELREATNSFSWSNMLGEGGFGPVYKGFVDDKLRPGLKAQTVAVKRLDLDGLQGHREWLAEIIFLGQLTHPHLVKLIGYCYEDEHRLLMYEYMPRGSLENQLFRRYSAAMPWSTRMKIALGAAKGLAFLHEGDKPVIYRDFKASNILLDSDFTAKLSDFGLAKDGPDGEDTHVTTRIMGTQGYAAPEYIMTGHLTTKSDVYSYGVVLLELLTGRRVVDKSRSNGGKSLVEWARPLLRDQKKVYNIIDRRLEGQFPKKGAMKVAMLAFKCLSHHPNARPTMSDVVKVLEPLQDFDDVFIGPFVYVAVSENGDKHKI 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00553 874 Gene3D Phosphorylase Kinase; domain 1 273 305 - -
Pumo9g00553 874 MobiDBLite consensus disorder prediction 30 115 - -
Pumo9g00553 874 Gene3D Phosphorylase Kinase; domain 1 530 651 - -
Pumo9g00553 874 FunFam Serine/threonine-protein kinase BIK1 535 651 - -
Pumo9g00553 874 ProSiteProfiles Protein kinase domain profile. 569 857 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g00553 874 Pfam Protein tyrosine and serine/threonine kinase 571 846 IPR001245 GO:0004672|GO:0006468
Pumo9g00553 874 Pfam Protein tyrosine and serine/threonine kinase 273 488 IPR001245 GO:0004672|GO:0006468
Pumo9g00553 874 SMART serkin_6 249 497 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g00553 874 SMART serkin_6 569 849 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g00553 874 MobiDBLite consensus disorder prediction 63 95 - -
Pumo9g00553 874 Coils Coil 210 230 - -
Pumo9g00553 874 ProSitePatterns Serine/Threonine protein kinases active-site signature. 347 359 IPR008271 GO:0004672|GO:0006468
Pumo9g00553 874 Coils Coil 175 205 - -
Pumo9g00553 874 PANTHER OS02G0152300 PROTEIN 1 489 - -
Pumo9g00553 874 ProSitePatterns Serine/Threonine protein kinases active-site signature. 695 707 IPR008271 GO:0004672|GO:0006468
Pumo9g00553 874 Gene3D Transferase(Phosphotransferase) domain 1 306 502 - -
Pumo9g00553 874 Gene3D Transferase(Phosphotransferase) domain 1 652 856 - -
Pumo9g00553 874 SUPERFAMILY Protein kinase-like (PK-like) 545 847 IPR011009 -
Pumo9g00553 874 ProSiteProfiles Protein kinase domain profile. 196 497 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g00553 874 FunFam Probable serine/threonine-protein kinase PBL8 652 860 - -
Pumo9g00553 874 Gene3D Phosphorylase Kinase; domain 1 228 272 - -
Pumo9g00553 874 CDD STKc_IRAK 575 849 - -
Pumo9g00553 874 SUPERFAMILY Protein kinase-like (PK-like) 230 488 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00553 Pumo-Chr9 9223388 9242710 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00553 557 773 Receptor kinase-like Gene Family AT5G12000 40.807 3.74e-45 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pumo9g00553 PK_Tyr_Ser-Thr 3.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00553 - - gmx:100786386 798.89