Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00545 ATGGGGAAACCGGCCATGGCTAGTGTTGATTCTTCTTCTTCTTCCTCTTGTAATAATGATTCATTTTCCACTAACAACAACAAAATCAACACTAGTAGTTGTAAGATGTACAAAGGGGTGAGGAAGAGAAAATGGGGCAAATGGGTGTCCGAGATTAGGCTTCCCAACAGCCGCGAGCGCATATGGTTGGGATCGTACGACACCCAAGTGAAGGCGGCCAGGGCGTTTGACGCCGCGCTTTATTGTCTACGTGGCAAAAGCGCGAGCTTCAATTTCCCTGACACACCTCAGCACTTGGAAATCAATATAGTGTTATCACGTGATGACCAGCAACAGCAACAGCCTCTCTCCCACCAGGAGATTCAAGAGGTAGCGGCGAAGTTTGCCAACAACGACCACCTTTCAGAGGAGAGTGTTTTCCAAGAACAAGAACAAGAACGGTCGTTGGAGTCACAAAGTGATGAGTCTTCTAAGTCCAACAACACAATGAGAGAGATGAGCAACTTCACTAATATTTATGATGGTGGGACTCATCATGTGCAAGTGGACCAACAAGGGGACTGGGACACCATGGATTGGACATTTTTGAACATGTTGGATGACTTGAATGGCTCAGATTTTGACCTCTATTTTGGGCCAGACAAGATGCACCCGGGTGAGTTTTTGTGTCCCACTCAAGCTCCACTACTCTTTCATGGAGATGGTGAAATTGAAGGTGATGATGATCATGATGCTTTTTCTAACCATTCCTTCCTTTGGAGTTGGAACTTTTGA 774 0.4587 MGKPAMASVDSSSSSSCNNDSFSTNNNKINTSSCKMYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTQVKAARAFDAALYCLRGKSASFNFPDTPQHLEINIVLSRDDQQQQQPLSHQEIQEVAAKFANNDHLSEESVFQEQEQERSLESQSDESSKSNNTMREMSNFTNIYDGGTHHVQVDQQGDWDTMDWTFLNMLDDLNGSDFDLYFGPDKMHPGEFLCPTQAPLLFHGDGEIEGDDDHDAFSNHSFLWSWNF 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00545 257 MobiDBLite consensus disorder prediction 135 162 - -
Pumo9g00545 257 MobiDBLite consensus disorder prediction 1 22 - -
Pumo9g00545 257 MobiDBLite consensus disorder prediction 7 22 - -
Pumo9g00545 257 Pfam AP2 domain 37 85 IPR001471 GO:0003700|GO:0006355
Pumo9g00545 257 CDD AP2 37 95 IPR001471 GO:0003700|GO:0006355
Pumo9g00545 257 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Pumo9g00545 257 MobiDBLite consensus disorder prediction 137 153 - -
Pumo9g00545 257 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Pumo9g00545 257 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Pumo9g00545 257 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Pumo9g00545 257 FunFam Ethylene-responsive transcription factor 2 35 94 - -
Pumo9g00545 257 Gene3D AP2/ERF domain 35 94 IPR036955 GO:0003700|GO:0006355
Pumo9g00545 257 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 18 183 - -
Pumo9g00545 257 SUPERFAMILY DNA-binding domain 36 94 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00545 Pumo-Chr9 9132142 9132915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00545 37 131 AP2-EREBP Transcription Factor Family AT1G19210 68.421 1.01e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo9g00545 AP2 1.1e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00545 - - gmx:112999363 379.022