LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo9g00535	ATGGCGGAGACAAGCGCCCGGTTTCTATATTGGATGAGGTTTACTATACATGGCAAGATTTACCAGTGCCACTCAGGAAAAGTGATGTTGTTGTGCAAAACAAGAGGATTGAAATTGATGCTGAGTATGACACTGCTGTGTATTGGAAACAGCGGGCTGCTGCAGTTGGAAAGACAGTTGGAGGCAAGTGTCCAGAGGGAGCAGATACTGATGGACAAGTTGCAAGAAAGTATAAAGAATCTTGAAAGGCAGTCCTCCCCTGTGGAAGAACTATCTCAGATTCTGAAGAGAGCAGATAATTTCTTACATTTTATACTCCAAAATGCACCTGTTGTTATTGGTCATCAGGACAAAGAGTTGCGCTATCGCTTTATCTACAATCATTTTCCGAGTTTACAAGAGGAGGACATCATAGGAAAAACAGATGTTGAAATTTTCACAGGATCCGGTGTTAAGGAATCTCAGGATTTCAAGAGGGAAGTAATGGAGAAAGGGTTGCCTGCAAAAAAGGAAATTACTTTTGAGACAGAATTATTTGGGTCAAAAACATTCTTGATATATGTAGAACCTGTCTTTAGCAAAGCAGGAGAGACAATTGGAATAAACTATATGGGAATGGAAATAACAGATCAGGTAAGAAAAAGAGAAAGAATGGCAAAGCTTAGGGAAGAGATTGCAGTCCAGAAAGCAAAGGAAACAGAACTTAATAAAACCATTCGCATTACAGAGGAGACTATGAGAGCAAAACAAATGCTGGCAACAATGTCTCATGAGATAAGATCTCCACTGTCTGGAGTTGTTAGCATGGCTGAAATTCTTTCCACCACGAAACTCGATCGGGAGCAAAGGCAGCTCTTGAATGTCATGATATCTTCAGGAGATTTGGTTCTTCAACTTATAAATGACATTCTTGATCTTTCCAAGGTTGAGTCAGGAGTTATGAAATTGGAAGCCACGAAATTCCGGCCAAGAGAGGTAGTAAAGCATGTACTCCAGACAGCTGCAGCATCATTGCAGAAAATGTTAACCTTAGAAGGAAATGTGGCAGATGATATACCTGTTGAGGTCATTGGAGATGTTTTGAGGATTCGGCAGATTCTCACAAATTTAGTCAGCAATGCGGTAAAGTTTACACATGAAGGCAAAGTTGGTATCAAGCTTTACGTTGTTTCAGAGCCACCTTTTGCCAAAGCAGAAGGCCATCAAAAGATGATCACAGATCAGTCAACAAATTCAGCAAATGGGGTGAAGGAAGAGAAACAGTGTATCAAAGCCGCGAAGCAGCAGTGA	1290	0.4093	MAETSARFLYWMRFTIHGKIYQCHSGKVMLLCKTRGLKLMLSMTLLCIGNSGLLQLERQLEASVQREQILMDKLQESIKNLERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFTGSGVKESQDFKREVMEKGLPAKKEITFETELFGSKTFLIYVEPVFSKAGETIGINYMGMEITDQVRKRERMAKLREEIAVQKAKETELNKTIRITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRQLLNVMISSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKMLTLEGNVADDIPVEVIGDVLRIRQILTNLVSNAVKFTHEGKVGIKLYVVSEPPFAKAEGHQKMITDQSTNSANGVKEEKQCIKAAKQQ	429

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo9g00535	429	Pfam	His Kinase A (phospho-acceptor) domain	249	312	IPR003661	GO:0000155\|GO:0007165
	Pumo9g00535	429	FunFam	Putative histidine kinase 5	235	312	-	-
	Pumo9g00535	429	Coils	Coil	218	238	-	-
	Pumo9g00535	429	MobiDBLite	consensus disorder prediction	409	429	-	-
	Pumo9g00535	429	FunFam	Histidine kinase 5	89	224	-	-
	Pumo9g00535	429	SMART	HisKA_10	247	312	IPR003661	GO:0000155\|GO:0007165
	Pumo9g00535	429	Gene3D	-	313	423	IPR036890	-
	Pumo9g00535	429	CDD	HisKA	249	308	IPR003661	GO:0000155\|GO:0007165
	Pumo9g00535	429	Gene3D	PAS domain	88	224	-	-
	Pumo9g00535	429	SUPERFAMILY	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	301	388	IPR036890	-
	Pumo9g00535	429	ProSiteProfiles	Histidine kinase domain profile.	254	419	IPR005467	-
	Pumo9g00535	429	Gene3D	-	229	312	-	-
	Pumo9g00535	429	Coils	Coil	57	91	-	-
	Pumo9g00535	429	PANTHER	TWO-COMPONENT HISTIDINE PROTEIN KINASE	55	389	-	-
	Pumo9g00535	429	SUPERFAMILY	Homodimeric domain of signal transducing histidine kinase	242	312	IPR036097	GO:0000155\|GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo9g00535	Pumo-Chr9	8550604	8553955	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo9g00535	54	418	Histidine Kinase Gene Family	AT5G10720	76.986	0.0	576

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo9g00535	-		-	gmx:100796072	690.263