Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00534 ATGAATGGAGATGCTGAGGAGCAAACTCATTCAACTGAAACAACTGTGTGGATACGTTGTGATGTATATGACACAGGAATTGGAATACCAGAAAAGGCTATACCTACTTTATTTAGAAGGTACATGCAAGTAAGTGCTGATCATGCTCGAAAGTATGGTGGCACAGGGCTGGGACTAGCAATATGCAAACAGCTCGGTAAGCTTTTTTTCCCCCCTCTTATTTTGGCCAAAGTTGAGTTAATGGGGGGTCGTCTAACAGTGACTAGCAAAGAACATGTTGGTTCTACCTTCACATTCATACTTCCATACAAGGTTTCCACAGCTTGTGATGATTCTGATGACCCAGATGAGCTCTCAGATGTGGATGATAGTGATGATGATACAACAGAGGGGTTCTTCCAATTCCAACCGCGCACTTTGGGCTCTCTCTTCTCTTCTAATGGACCTACCAGGCCCCAAAATATACTACCAGGTTTCAGAAGCTCACACAAGTTCAATGGCTTTTCAGAGAATTCTTACTCATTCCTCACTACCAACATAAGATCAAAAGGGACTAGTTCAACTGAGGATGCATCTTCAGTCATTGTTGATGCTCCAGAGATGTCTGAATCAACAAGCTCATCAAGTCATAGCCCGGAAACAAAGCATGAAAATGTAGTTAACACAAATAATCAGAATCAAGATAAGGCACATGCTCGGTTACAGAATGGTAGTGTAGACTCTTCTCAACATAAGGAGGCAATGACTCTAGGAACAATGTCAAGTGAACCACAACAAACATGTCAAGAAGTGAAGACAGACATAACCTCCCAATGTGTTATTAGTAGTAATAATAACACATCATCAGAAGTAACCAAATCCTCATTAGGGCCTAAGATTCTTCTTGTTGAAGATAACAAGATCAATGTCATGGTGACACAGTCAATGATGAAGCGGTTAGGCTATAGCATGGATGTTGTGAATAATGGAGTGGAAGCCGTACGTGCAGTGCAGCGCCATACTTATGATGTCATTTTGATGGATGTTTACATGCCAGTTATGAATGGTCTTCAAACAACAAAACTGATTCGGTCTTATGAGGAAACAGGCAATTGGGAAGCTGCAAGTAAAGCTGGAATTGAACAATGTTCACCAGCTTCAAATGAATGTTCTGTACCACCTAAAAACCGGATCCACATCATTGCGATGACAGCAAACACAATGTCAGAGAGTGCTGAGGAATGTTATGCAAATGGTATGGACTCGTTTGTGTCAAAACCTGTGACATTCCAAAAATTGAAAGATTGTCTAGAACAGTACCTGAGGTGA 1308 0.4121 MNGDAEEQTHSTETTVWIRCDVYDTGIGIPEKAIPTLFRRYMQVSADHARKYGGTGLGLAICKQLGKLFFPPLILAKVELMGGRLTVTSKEHVGSTFTFILPYKVSTACDDSDDPDELSDVDDSDDDTTEGFFQFQPRTLGSLFSSNGPTRPQNILPGFRSSHKFNGFSENSYSFLTTNIRSKGTSSTEDASSVIVDAPEMSESTSSSSHSPETKHENVVNTNNQNQDKAHARLQNGSVDSSQHKEAMTLGTMSSEPQQTCQEVKTDITSQCVISSNNNTSSEVTKSSLGPKILLVEDNKINVMVTQSMMKRLGYSMDVVNNGVEAVRAVQRHTYDVILMDVYMPVMNGLQTTKLIRSYEETGNWEAASKAGIEQCSPASNECSVPPKNRIHIIAMTANTMSESAEECYANGMDSFVSKPVTFQKLKDCLEQYLR 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00534 435 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 16 103 IPR003594 -
Pumo9g00534 435 Pfam Response regulator receiver domain 293 362 IPR001789 GO:0000160
Pumo9g00534 435 SMART REC_2 291 430 IPR001789 GO:0000160
Pumo9g00534 435 MobiDBLite consensus disorder prediction 110 132 - -
Pumo9g00534 435 SUPERFAMILY CheY-like 291 435 IPR011006 -
Pumo9g00534 435 ProSiteProfiles Histidine kinase domain profile. 22 105 IPR005467 -
Pumo9g00534 435 Gene3D - 2 109 IPR036890 -
Pumo9g00534 435 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 11 434 - -
Pumo9g00534 435 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 13 105 IPR036890 -
Pumo9g00534 435 FunFam Histidine kinase 5 285 435 - -
Pumo9g00534 435 SMART HKATPase_4 3 105 IPR003594 -
Pumo9g00534 435 MobiDBLite consensus disorder prediction 112 129 - -
Pumo9g00534 435 ProSiteProfiles Response regulatory domain profile. 292 434 IPR001789 GO:0000160
Pumo9g00534 435 CDD REC_hyHK_CKI1_RcsC-like 293 430 - -
Pumo9g00534 435 Gene3D - 285 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00534 Pumo-Chr9 8547634 8550541 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00534 1 434 Histidine Kinase Gene Family AT5G10720 48.667 6.40e-126 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo9g00534 HATPase_c 1.4e-17 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00534 - - gmx:100796072 744.577