Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00511 ATGGTCGTTCAACTCTTCAACAAAGCAATCATAATGGATGAAAAGGTGGAAACTCTTAAAGCTGAGTCACAACGAGTGAGGGAGGAGAATAACACTCTAAAACTGATGCTTGGTGTTCTAAGCAGCAAGTGCACAAAGCTTGAGACCCATCTTCAAGAGATAAACAAGGCACAACACAAGGGCATGAGTTCAAATCAAATAGGGTCAGTAACAGTACCCCCTATCTTTGATACAAACAAGAGACCGAGACTAGAGTTTCCCACAGCAAAAAAGCCATTACAAATCTTTCTCAGAACACACCCCAAGGATGATAGTTTGATAGTAAAAGATCGCTATCAGTGGAGGAAGTATGGACAGAAGGTCACCAAAGACAATGCTTCACCAAGAGCTTACTTCAGGTGCTCTATGGCCCCCATTTGCCCAGCAAAAAAGAGGGTGCAAAGATGTTTACATGATAAGTCTATCCTTGTTGCCACTTATGATGGAGAGCACAACCATGGTGCCCTTCATGAGTCATCTTCATCCACACCTAAAGGCTCATCATCAGTGGCTAATAAGTTACCTCTGATGACAAGCATACCAAATGACAAAGAAACCATGAACATTGACTTGGCTCTTTCTGGGTGGACTCAAACAGATAGGAGACACTGTGAAGATGTCATGCAACAGAATAATAACCATGGTAATAGCAACATCAAAATTGAAGAATATGTAAGTTCTCTAATCAAAGATCCTAACTTCACCATGTCATTAGCTGAAGCAGTTGCCCGCACCATCACTGGCCAGCAAAAGCAACAAGATCTAAACCTCAATTTGGATCTTCCTGAAGAGTGA 834 0.4185 MVVQLFNKAIIMDEKVETLKAESQRVREENNTLKLMLGVLSSKCTKLETHLQEINKAQHKGMSSNQIGSVTVPPIFDTNKRPRLEFPTAKKPLQIFLRTHPKDDSLIVKDRYQWRKYGQKVTKDNASPRAYFRCSMAPICPAKKRVQRCLHDKSILVATYDGEHNHGALHESSSSTPKGSSSVANKLPLMTSIPNDKETMNIDLALSGWTQTDRRHCEDVMQQNNNHGNSNIKIEEYVSSLIKDPNFTMSLAEAVARTITGQQKQQDLNLNLDLPEE 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00511 277 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 15 264 IPR044810 GO:0003700
Pumo9g00511 277 SUPERFAMILY WRKY DNA-binding domain 104 167 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo9g00511 277 SMART WRKY_cls 108 168 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo9g00511 277 Pfam WRKY DNA -binding domain 109 166 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo9g00511 277 Gene3D WRKY domain 95 168 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo9g00511 277 Coils Coil 16 36 - -
Pumo9g00511 277 ProSiteProfiles WRKY domain profile. 103 169 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00511 Pumo-Chr9 8183228 8197145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00511 13 267 WRKY Transcription Factor Family AT1G80840 33.904 1.80e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo9g00511 WRKY 1.9e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00511 - - gmx:100170679 467.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00511 9 8183228 8197145 Pumo10g00153 10 2301056 2302309 PCT