Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00506 ATGAAGTTTATGAAGTTGGGTTCGAAGCCTGATGCTCTTCAAAGTGATGGAAAATCTATCAGATATATATCATCTGAATTGGCTACAGATATTATCATAACTGTTGGTGAAGTTAAGTTTCACCTGCACAAGTTCCCTCTACTGTCCAAGAGTAATCGTTTACAAAAGTTGCTGTCAAAGGCTAATGAAGAGAGTCCTGATGAAATTCAATTGGATAATTTTCCTGGTGGTCCCAAGGCCTTTGAAATATGTGCTAAGTTCTGCTATGGAATGACTGTTACTCTTAATGCTTACAATGTTGTGGCTGCTCGTTGTGCTGCTGAGTACCTTGAGATGACTGAGGATATTGATAGAGGGAACTTAATTTTCAAAATTGAGGTGTTTCTTACCTCGAGTATATTTCGTAGCTGGAAGGATTCTATAATTGTTCTCCAAACTACTAAATCTCTTCTGCCATGGTCTGAGGACCTAAAGATAGTTGGGAGATGTATAGATTCCATAGCTTCTAAAACTTCTGTGGATCCAGCAAACATCACTTGGTCTTACACTTATAACCGGAAATTATCAGAGCTTGATAAAATTGTCGAGGACAAGATAACACCACAAGAGAAAATTGAGCCTGTTCCTAAGGATTGGTGGGTTGAAGATATATGTGAGCTGGAGCATTGA 669 0.3857 MKFMKLGSKPDALQSDGKSIRYISSELATDIIITVGEVKFHLHKFPLLSKSNRLQKLLSKANEESPDEIQLDNFPGGPKAFEICAKFCYGMTVTLNAYNVVAARCAAEYLEMTEDIDRGNLIFKIEVFLTSSIFRSWKDSIIVLQTTKSLLPWSEDLKIVGRCIDSIASKTSVDPANITWSYTYNRKLSELDKIVEDKITPQEKIEPVPKDWWVEDICELEH 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00506 222 Gene3D Potassium Channel Kv1.1; Chain A 4 118 IPR011333 -
Pumo9g00506 222 ProSiteProfiles BTB domain profile. 29 97 IPR000210 GO:0005515
Pumo9g00506 222 CDD BTB_POZ_NPY3-like 21 124 - -
Pumo9g00506 222 PANTHER OS12G0117600 PROTEIN 24 221 IPR043454 -
Pumo9g00506 222 SUPERFAMILY POZ domain 22 115 IPR011333 -
Pumo9g00506 222 ProSiteProfiles NPH3 domain profile. 211 222 IPR027356 -
Pumo9g00506 222 FunFam BTB/POZ domain-containing protein NPY2 17 121 - -
Pumo9g00506 222 Pfam BTB/POZ domain 26 116 IPR000210 GO:0005515
Pumo9g00506 222 SMART BTB_4 29 127 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00506 Pumo-Chr9 8117052 8119669 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00506 22 220 EF-hand Containing Proteins AT3G44820 35.468 2.74e-40 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Pumo9g00506 BTB 9.4e-09 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00506 - - gmx:100809437 435.647