Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00505 ATGGCTGAATTCACAGAAAATTTGCAAAGCGTTGGACCCTCCTCATTTCCATTCTTAGACGTTGATTATCCAAGCATGGAACTCCTAAACGAATTCATAGGGATGAACCAATTATATGTGCTAGGCAACTCAAACTTGGCTATGCATAACTTGATGCCTTTCTCCTATGACACGTTCTTGGGCCCCCAAGAACCTGAGTTTCCAGAAAACTTGGAAGAAGATTTCCCTTTTCTCTTCCATCATGCCAACCACAATGCACTTCCTGTTTCCCTCCCCATTTTCCAAGCAGAAAATGAGATCCATGAAGGTAGAAAGAGGAAATCAATGGATCTTCCTGAGACCAGTTTAGCTAACTCAACTCCTGCAGTTTCTGAGAGTGGAAGCAAGATCAAACATAGTTCTGGAAGAGGAAAGAGACTGAAAAACAATGTAACAGAAGAAGAGAAAGCAAAGGAAGTGGTTAATGTCAGAGCTAGAAGAGGTCAAGCTGCTGATAGTCACAATTTAGCAGAAAGGGTTAGAAGAGGGAAAATCAAGGAGAAATTAAGGTGCTTACAGAATATTGTTCCAGGGTGTTACAAGACAATGGGTATGGCAGTAATGTTGGATGAAATCATAAACTATGTGCAGTCCTTGAAGCATCAAGTAGAGTTCCTTTCTTTTAAGCTTACTGCAGCAAGTACCTTTTATGACTTCAATTCCGAGATAGTTGCTTGGAAACAATGCAGAGACCAAGGCCATCCGAGGCAAAAGAGTTTGGCAAGTATATATGAGAGAGAAGGGTATGAAGGAGTTTCTTGCTTTCAACCAACATGGCCTTTGACTTCAGTTTTGGATGTTTTAACTCAGCAGCCATATTACAGGACATGA 870 0.4103 MAEFTENLQSVGPSSFPFLDVDYPSMELLNEFIGMNQLYVLGNSNLAMHNLMPFSYDTFLGPQEPEFPENLEEDFPFLFHHANHNALPVSLPIFQAENEIHEGRKRKSMDLPETSLANSTPAVSESGSKIKHSSGRGKRLKNNVTEEEKAKEVVNVRARRGQAADSHNLAERVRRGKIKEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLKHQVEFLSFKLTAASTFYDFNSEIVAWKQCRDQGHPRQKSLASIYEREGYEGVSCFQPTWPLTSVLDVLTQQPYYRT 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00505 289 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 212 IPR011598 GO:0046983
Pumo9g00505 289 Gene3D - 158 220 IPR036638 GO:0046983
Pumo9g00505 289 MobiDBLite consensus disorder prediction 112 130 - -
Pumo9g00505 289 SMART finulus 168 218 IPR011598 GO:0046983
Pumo9g00505 289 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 228 IPR036638 GO:0046983
Pumo9g00505 289 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 103 251 IPR024097 GO:0006355
Pumo9g00505 289 MobiDBLite consensus disorder prediction 104 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00505 Pumo-Chr9 8072069 8074486 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00505 84 274 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 47.748 1.54e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo9g00505 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00505 - - gmx:100806942 409.838