LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo9g00490	ATGAATTTCTTAGCTCTATCAAACAGTAATGGGAGAAAAAAACAGCCACTGAGAGTACCAGAGATGGCGATAACAATTTTTGTTATTCTCATGCTGGCCTTTCCTCCTACAGCAGAATCACTAAATTTCAACATAACAAACTTCGACGACCCCGAGAGTGTAGAAAACATGGCATACCAGGGTGACGGCAAAGTAAACAACGGCACCGTAGAACTCAACAAAGTGAGTTTTCTTTTCCGCGTTGGAAGAGCCTTGTACGGACAACCCCTTCACCTGTGGGACTCATCTTCTGGTGTTCTAACAGACTTCTCCACGCGCTTCACTTTCACTATTGACAGAGCCACAAACGATACCTACGGTGATGGTTTTGCCTTCTACATAGCCCCTCATGGCTACGAGATTCCTCCAAATGCAGCAGGTGGCACTTTTGCCCTTTTCAACGGCACCGAGAATAGGTACCTTCCCCATGACCAAGTGCTCGCAGTTGAGTTTGACACATTTAATGGCACAATTGACCCTCCCTTTCAGCACGTTGGCATAGACGAAAACTCTCTTCAATCCAAGGTTTTTGCCGAATTTGACATCGACAAAAACCTCGGAAACAAATGTCACGCTTTGGTGACCTACACTGCTTCCAACAAGACACTCTCTGTGTCTTGGTCCTTCAACGGAAGCGCAATGCCAAATTCGAAGAATTCTTCACTTTCTTACCAGATTGACCTCATGGAAATTCTACCACAGTGGGTGGATGTTGGGTTCTCCGCTTCAACTGGCCAATATACTGAACAAAACGTTATTCATTCGTGGGAGTTCAGTTCAACGTTGAATTCTTCCACTGCTTCAAATAATGCAGCGAAGCCCGGATCCAGAAACGGGTTGAGCACCGTTGTGCTGGTTGTTGTGGTCAATTGTGCAATCGTTTTGGTGGCTGTGGCCGCAAATGTTGCAGCTTGGGTAATAATCATGAAGAAGAGAAGGGGTAAGGGTGATGGTGATAATGATATTGATGAACGTGAACCCACATCGGTTAAGTTTGACTTGGATAGGGCAACTATACCTAGAAGATTTGATTACAAAGAGCTAGTTGTAGCGACCAATGGGTTTGCGGATGATACAAGGCTGGGACGAGGAGGCTCGGGACAAGTTTACAAAGGGGTTCTGAGTCATCTGGGAAGGGTTGTTGCTGTGAAAAGGATTTTCACTAACTCTGAAAATTCAGAGAGAGTTTTCATCAACGAGGTTAGGATCATAAGTCGTCTTATACACAGAAACTTGGTGCAGTTCGTAGGGTGGTGCCACGAGCAAGGTGAATTTTTGTTGGTTTTTGAGTTCATGCCTAATGGAAGCCTCGACACTCATCTCTTCGGGGAGAAAAAAACTTTGGCCTGGGATGTTAGGTACAAGGTAGCATTAGGTGTGGCTCTGGCAGTTCGTTATCTTCATGAGGATGCAGAGCAGAGTGTTCTTCATAGGGATATTAAGTCAGCTAATGTGTTGTTGGACACGGATTTTAGCACCAAGCTTGGCGATTTTGGGATGGCAAAGTTGGTGGATCCAAGGTTAAGGACTCAAAGGACAGGAGTGGTGGGGACTTATGGGTACCTTGCCCCAGAATACATCAATGGAGGTAGGGCTAGCAAGGAATCAGACATTTATAGTTTTGGGGTTGTGGCTCTTGAAATTGCATGTGGGAAGAGGACTCACAAAGATGGGGAGTTTCTTGTGCCTCTCGTGAATTGGATGTGGCAATTGTACGTGGAAGGAAATGTTCTGGATTCTGTTGATGAGAGATTAAACAAGGAGTTTGATGTGGATCAAATGACTAGCTTGATTGTTGTGGGGTTGTGGTGTACTAACCCAAACAACAAGGAAAGGCCCACGGCTGCCCAAATAATAAAAGTTCTTCAGCTTGAAGCACCATTGCCAGTGCTTCCACTCGATATGCATGACCATCCTCCTTCTTTAGTTACCCTTGCACAACCCACTCACGATTCCTTACAATCAGCACCCTTCACTAATAGCTTTGTTAGTGTTGGACGCTAA	2043	0.4523	MNFLALSNSNGRKKQPLRVPEMAITIFVILMLAFPPTAESLNFNITNFDDPESVENMAYQGDGKVNNGTVELNKVSFLFRVGRALYGQPLHLWDSSSGVLTDFSTRFTFTIDRATNDTYGDGFAFYIAPHGYEIPPNAAGGTFALFNGTENRYLPHDQVLAVEFDTFNGTIDPPFQHVGIDENSLQSKVFAEFDIDKNLGNKCHALVTYTASNKTLSVSWSFNGSAMPNSKNSSLSYQIDLMEILPQWVDVGFSASTGQYTEQNVIHSWEFSSTLNSSTASNNAAKPGSRNGLSTVVLVVVVNCAIVLVAVAANVAAWVIIMKKRRGKGDGDNDIDEREPTSVKFDLDRATIPRRFDYKELVVATNGFADDTRLGRGGSGQVYKGVLSHLGRVVAVKRIFTNSENSERVFINEVRIISRLIHRNLVQFVGWCHEQGEFLLVFEFMPNGSLDTHLFGEKKTLAWDVRYKVALGVALAVRYLHEDAEQSVLHRDIKSANVLLDTDFSTKLGDFGMAKLVDPRLRTQRTGVVGTYGYLAPEYINGGRASKESDIYSFGVVALEIACGKRTHKDGEFLVPLVNWMWQLYVEGNVLDSVDERLNKEFDVDQMTSLIVVGLWCTNPNNKERPTAAQIIKVLQLEAPLPVLPLDMHDHPPSLVTLAQPTHDSLQSAPFTNSFVSVGR	680

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo9g00490	680	Gene3D	Phosphorylase Kinase; domain 1	353	444	-	-
	Pumo9g00490	680	SUPERFAMILY	Protein kinase-like (PK-like)	352	650	IPR011009	-
	Pumo9g00490	680	SUPERFAMILY	Concanavalin A-like lectins/glucanases	39	275	IPR013320	-
	Pumo9g00490	680	FunFam	L-type lectin-domain containing receptor kinase IX.1	353	444	-	-
	Pumo9g00490	680	PANTHER	-	67	639	-	-
	Pumo9g00490	680	ProSitePatterns	Protein kinases ATP-binding region signature.	374	397	IPR017441	GO:0005524
	Pumo9g00490	680	ProSiteProfiles	Protein kinase domain profile.	368	644	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo9g00490	680	Pfam	Protein kinase domain	370	633	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo9g00490	680	Pfam	Legume lectin domain	40	284	IPR001220	GO:0030246
	Pumo9g00490	680	Gene3D	-	38	287	-	-
	Pumo9g00490	680	FunFam	L-type lectin-domain containing receptor kinase IX.1	39	289	-	-
	Pumo9g00490	680	Gene3D	Transferase(Phosphotransferase) domain 1	445	647	-	-
	Pumo9g00490	680	ProSitePatterns	Legume lectins beta-chain signature.	160	166	IPR019825	-
	Pumo9g00490	680	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	488	500	IPR008271	GO:0004672\|GO:0006468
	Pumo9g00490	680	CDD	lectin_legume_LecRK_Arcelin_ConA	41	275	IPR001220	GO:0030246
	Pumo9g00490	680	ProSitePatterns	Legume lectins alpha-chain signature.	245	254	IPR000985	-
	Pumo9g00490	680	SMART	serkin_6	368	637	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo9g00490	680	FunFam	L-type lectin-domain containing receptor kinase IX.1	445	645	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo9g00490	Pumo-Chr9	7827198	7895474	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo9g00490	22	648	Receptor kinase-like Gene Family	AT5G10530	44.898	1.49e-179	524

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Pumo9g00490		Pkinase	6.2e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo9g00490	-		-	gmx:100305427	1077.77