LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo9g00487	ATGAATTTCTTAGCTCTATCAAAAAAAGGGAGAGAAAAACAGTCACTGAGATCACCAGAGATGGTGATCACAGTTTTTCTCCTCGTGTTAGCCCTTCCTTCTCCTCTTAAAACAGCAGAATCACTAAACTTCAACATAACAAACTTCAACGACCTCGAGAGTGCAAAAAACATGGCATACGTGGGTGACGGCAAAGCAAACAACAACGGCTCCATAGAGCTCAACATAGTGGACTATCTTTTCCGCGTTGGGAGAGCCTATTACGGACAACCTATGCGCCTTTGGGACTCATCTTCTGGTGTTGTAACAAACTTCTCCACGCGCTTCACTTTCACTATTGACAGAGGAAACAACAAAAGTGCCAAATATGCTGACGGTTTCGCCTTCTACATAGCCCCAAATGGCTACCAGATTCCTCCAAATGCAGCAGGTGGCACTTTTGCCCTCTTCAACGTCACCTCCAATCCCTTCATTCCCCATAACCACGTGCTCGCGGTTGAGTTTGACACATTTAACGGCACAATTGACCCTCCATATCAGCACGTTGGCATAGATGATAACTCTCTCAAATCCCTAACTACTGCCGAGATTGACATTGACAAAAACCTCGGAAAGAAATGTAACGTTTTGATAACCTACAATGCTTCCAACAAGACCCTCTCTGTGTCTTGGTCCTTCAACGGAACCGCAACGCCGAATTCGAAGAACTCTTCACTTTCTTACCAGATTGACCTCATGGAGATTCTTCCCGAGTGGGTGGATGTTGGGTTCTCCGCTTCAACCGGCGATCTCACTGAACGAAACATTATTCATTCATGGGAGTTCAGTTCAACGTTGAATTCTTCCACTGCTTCGAATAACAATTATGATAATGGAGGGAAGCACGGAAACGGGTTGAGCGGGGTTGCGGTGGTTGTTGTGGTGGCGTGTGCAATTGTTTTAGTGGCCGCGGCGGCGAATGTTGCAGCTTGGGTGATAATCATGAAGAAGAGAAGGGGTAAGGATGATTATGATCATAATATTGATGAAAGTGGACCCACATCGGCTAAGTTTGATTTGGATAGGGCAACTATACCTAGAAGATTTGATTACAAAGAACTAGTTGTAGCTACCAATGGGTTCGCGGATGATGCAAGGCTGGGACGAGGAGGCTCGGGACAAGTTTACAAAGGGGTTCTGAGTCATCTAGGAAGGGTTGTTGCTGTTAAAAGGATTTTCACTAACTTTGAAAGTTCAGAGAGAGTTTTCATCAACGAGGTTAGGATCATAAGCCGTCTTATACACAGAAACTTGGTGCAGTTCGTAGGGTGGTGCCACGAGCAAGGAGAGTTTCTGTTGGTTTTTGAGTTCATGCCTAATGGAAGCCTCGACACTCATCTCTTTGGGGAGAAAAAAACTTTGGCCTGGGATGTTAGGTACAAGATAACATTAGGCATGGCTTTGGCAATTCGTTATCTTCATGAGGAAGCGGAGCAAAGTGTTCTTCATAGAGATATTAAGTCGGCTAATGTGTTGTTGGACACAGATTTTAGCACCAAGCTTGGTGATTTTGGGATGGCAAAGTTAGTGGATCCAAGGTTGAGGACTCAGAAGACAGGGGTAGTAGGGACTTATGGATACCTTGCCCCAGAATATATCAACGGAGGTAGGGCTAGCAAGGAATCAGGACATTTATAG	1677	0.4502	MNFLALSKKGREKQSLRSPEMVITVFLLVLALPSPLKTAESLNFNITNFNDLESAKNMAYVGDGKANNNGSIELNIVDYLFRVGRAYYGQPMRLWDSSSGVVTNFSTRFTFTIDRGNNKSAKYADGFAFYIAPNGYQIPPNAAGGTFALFNVTSNPFIPHNHVLAVEFDTFNGTIDPPYQHVGIDDNSLKSLTTAEIDIDKNLGKKCNVLITYNASNKTLSVSWSFNGTATPNSKNSSLSYQIDLMEILPEWVDVGFSASTGDLTERNIIHSWEFSSTLNSSTASNNNYDNGGKHGNGLSGVAVVVVVACAIVLVAAAANVAAWVIIMKKRRGKDDYDHNIDESGPTSAKFDLDRATIPRRFDYKELVVATNGFADDARLGRGGSGQVYKGVLSHLGRVVAVKRIFTNFESSERVFINEVRIISRLIHRNLVQFVGWCHEQGEFLLVFEFMPNGSLDTHLFGEKKTLAWDVRYKITLGMALAIRYLHEEAEQSVLHRDIKSANVLLDTDFSTKLGDFGMAKLVDPRLRTQKTGVVGTYGYLAPEYINGGRASKESGHL	558

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo9g00487	558	FunFam	L-type lectin-domain containing receptor kinase IX.1	359	450	-	-
	Pumo9g00487	558	FunFam	Os07g0541700 protein	451	537	-	-
	Pumo9g00487	558	ProSitePatterns	Legume lectins beta-chain signature.	164	170	IPR019825	-
	Pumo9g00487	558	Pfam	Protein kinase domain	376	552	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo9g00487	558	Gene3D	Phosphorylase Kinase; domain 1	359	450	-	-
	Pumo9g00487	558	FunFam	L-type lectin-domain containing receptor kinase IX.1	40	293	-	-
	Pumo9g00487	558	ProSiteProfiles	Protein kinase domain profile.	374	558	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo9g00487	558	CDD	lectin_legume_LecRK_Arcelin_ConA	42	279	IPR001220	GO:0030246
	Pumo9g00487	558	ProSitePatterns	Protein kinases ATP-binding region signature.	380	403	IPR017441	GO:0005524
	Pumo9g00487	558	SMART	serkin_6	374	558	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo9g00487	558	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	494	506	IPR008271	GO:0004672\|GO:0006468
	Pumo9g00487	558	SUPERFAMILY	Protein kinase-like (PK-like)	360	554	IPR011009	-
	Pumo9g00487	558	Gene3D	-	39	291	-	-
	Pumo9g00487	558	SUPERFAMILY	Concanavalin A-like lectins/glucanases	40	281	IPR013320	-
	Pumo9g00487	558	PANTHER	-	69	555	-	-
	Pumo9g00487	558	ProSitePatterns	Legume lectins alpha-chain signature.	249	258	IPR000985	-
	Pumo9g00487	558	Gene3D	Transferase(Phosphotransferase) domain 1	451	555	-	-
	Pumo9g00487	558	Pfam	Legume lectin domain	41	286	IPR001220	GO:0030246

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo9g00487	Pumo-Chr9	7711124	7715126	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo9g00487	23	555	Receptor kinase-like Gene Family	AT5G10530	45.522	1.62e-146	435

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Pumo9g00487		Lectin_legB	2.2e-66	CL0004

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo9g00487	-		-	gmx:100305427	936.791