Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00471 ATGGACGCAGGTTACAATCCTCGTACCGTCGAAGAGGTCTTTAGGGATTTCAAAGGTCGCAGAGCTGCTTTGATTAAAGCCCTCACCACCGATGTTGAAGAGTTCTACCAGCAGTGCGATCCCGAGAAGGAAAATCTTTGCCTTTATGGATTTCCAAGTGAGCAGTGGGAAGTCAATCTGCCAGCTGAGGAGGTGCCCCCAGAGCTTCCAGAGCCAGCATTGGGCATTAACTTTGCCAGAGATGGGATGCAAGAAAAGGACTGGCTGTCTTTGGTTGCTGTACACAGTGATGCTTGGTTACTTGCTGTGGCTTTTTATTTTGGTGCTAGGTTTGGATTTGACAAGGCTGATAGGAAGCGACTATTTAATATGATAAATGATCTTCCGACAATATTTGAGGTTGTTACAGGGATGGCCAAGAAACAAGGAAAGGAAAAGTCATCAGTTTCAAATCATAGCAGTAGCAAATCTAAGTCAAACTCTAAGCGAGGTTCTGAATCAAAGTATGCAAAAGCAATGCAATCAAAGGACGAGGATGATGAGGGTGAGGGTGTGGGTGTGGGTGTGGGTGTGGATGTGGGTTTGGGTTTGGGTTTGGAAGAGGAAGATGAAGAGGAACATGGAGAGACTTTGTGTGGGGCATGCGGAGAGAGCTATGCTGCTGATGAGTTCTGGATCTGCTGTGACATCTGTGAGAAGTGGTTCCATGGAAAGTGTGTGAAGATTACTCCTGCAAGGGCTGAGCATATCAAGCAGTACAAATGTCCATCTTGCAGCAACAAGAGAGCTCGACCTTGA 798 0.4649 MDAGYNPRTVEEVFRDFKGRRAALIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFNMINDLPTIFEVVTGMAKKQGKEKSSVSNHSSSKSKSNSKRGSESKYAKAMQSKDEDDEGEGVGVGVGVDVGLGLGLEEEDEEEHGETLCGACGESYAADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00471 265 CDD PHD_AL_plant 211 261 IPR044104 -
Pumo9g00471 265 PANTHER CPG BINDING PROTEIN 6 264 IPR045104 GO:0006355|GO:0042393
Pumo9g00471 265 Pfam PHD-finger 212 261 IPR019787 -
Pumo9g00471 265 Pfam Alfin 9 137 IPR021998 GO:0006355|GO:0042393
Pumo9g00471 265 ProSiteProfiles Zinc finger PHD-type profile. 209 261 IPR019787 -
Pumo9g00471 265 MobiDBLite consensus disorder prediction 159 183 - -
Pumo9g00471 265 SUPERFAMILY FYVE/PHD zinc finger 201 262 IPR011011 -
Pumo9g00471 265 ProSitePatterns Zinc finger PHD-type signature. 212 258 IPR019786 -
Pumo9g00471 265 MobiDBLite consensus disorder prediction 143 185 - -
Pumo9g00471 265 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 260 IPR013083 -
Pumo9g00471 265 SMART PHD_3 211 259 IPR001965 -
Pumo9g00471 265 FunFam PHD finger alfin-like protein 204 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00471 Pumo-Chr9 7372545 7381202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00471 3 264 Alfin-like Transcription Factor Family AT3G42790 74.525 2.10e-126 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Pumo9g00471 Alfin 1.8e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00471 K26274 - gmx:100797908 451.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00471 9 7372545 7381202 Pumo9g00471 9 7372545 7381202 ECH