LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo9g00443	ATGGAGAGAATTAAAGTGAAGGAGGAAGAAACGGTGACATGTGGTGGTGGTTCATCATCATCATCTTCATCTTCAAGTTTTTCTCCACAGCCCATGGAAGGGTTGCACGAGGTGGGTCCCCCTCCGTTTCTGACCAAGATCTTTGACATGGTGGAAGATCCTTCCACGGATTCCATTGTTTCATGGAGCATGGCTCGCAACAGCTTTGTCGTGTGGGACTCTCACAAGTTTTCTGTTGACATTCTGCCTCGTTACTTCAAGCACGGCAATTTCTCAAGCTTCATTCGCCAGCTCAACACCTATGGGTTTAGGAAAGTTGATCCTGATAGATGGGAATTTGCAAACGAAGGGTTTTTAGCAGGACAAAGGCACTTATTGAAGACCATTAAGAGAAGAAGAAATGTGTCACAGAGTATGCAACAAAGAGGAGGAAGTGGAGCTTGTGTTGAAGTAGGGGAGTTTGGACTAGAAGGTGAGTTGGAGAGGTTGAAAAGGGATAGGAACATTTTGATGGCAGAAATTGTGAGGTTGAGGCACCAACAGCTGAACTCAAGGGACCAATTGAGTTCCATGGAGGCCAGATTGCAAGCCACTGAGAAGAAACAGCAACAAATGATGACTTTCCTTGCCAAAGCACTGAGTAATCCATCTTTCATGCAGCAATTAGTCCACAAGACCCCCCAAAGTAGAGAAGTGTTGGGTGTTGATATCACCAGGAAAAGGAGACTAACTGCTAGCCCAAGTGTGGAGAACTTGCAACAAGATGATCCTGTAACACTGGTGGACTATCCAAGCCATGATCAAGATTTGGCAACTATGGAACCTGATATGGACACTTTTTTCTCACCAGCTTATGATAGTGAACTTAGAAATGAATTCAATGAGCCTGCATCTAGTTCAGTTATAACAGCTAGTGGGAGTGATTTTGGTTCAATTGGGGATACTATCTTAGAGGACTTTCTCAACAAAGACTTGGTTACTGGGAATCCAGAGGATGAAGTTATAATTGGTGATTGTTCCCAAGTTGATGTGCCAGTGGAGGATTTGGTAGCAAACCCTGATGATTGGAGTGAGCAATTGCAGGACCTTGTGGATCATATGGACTATCTAGGATCCAAACCATAG	1125	0.4418	MERIKVKEEETVTCGGGSSSSSSSSSFSPQPMEGLHEVGPPPFLTKIFDMVEDPSTDSIVSWSMARNSFVVWDSHKFSVDILPRYFKHGNFSSFIRQLNTYGFRKVDPDRWEFANEGFLAGQRHLLKTIKRRRNVSQSMQQRGGSGACVEVGEFGLEGELERLKRDRNILMAEIVRLRHQQLNSRDQLSSMEARLQATEKKQQQMMTFLAKALSNPSFMQQLVHKTPQSREVLGVDITRKRRLTASPSVENLQQDDPVTLVDYPSHDQDLATMEPDMDTFFSPAYDSELRNEFNEPASSSVITASGSDFGSIGDTILEDFLNKDLVTGNPEDEVIIGDCSQVDVPVEDLVANPDDWSEQLQDLVDHMDYLGSKP	374

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo9g00443	374	Pfam	HSF-type DNA-binding	43	132	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pumo9g00443	374	Coils	Coil	160	180	-	-
	Pumo9g00443	374	FunFam	Heat shock transcription factor 1	36	133	-	-
	Pumo9g00443	374	SMART	hsfneu3	39	132	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pumo9g00443	374	ProSitePatterns	HSF-type DNA-binding domain signature.	82	106	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pumo9g00443	374	SUPERFAMILY	"Winged helix" DNA-binding domain	39	132	IPR036390	-
	Pumo9g00443	374	Gene3D	-	36	133	IPR036388	-
	Pumo9g00443	374	PRINTS	Heat shock factor (HSF) domain signature	43	66	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pumo9g00443	374	PRINTS	Heat shock factor (HSF) domain signature	81	93	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pumo9g00443	374	PRINTS	Heat shock factor (HSF) domain signature	94	106	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pumo9g00443	374	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	29	266	IPR027725	-
	Pumo9g00443	374	MobiDBLite	consensus disorder prediction	13	31	-	-
	Pumo9g00443	374	MobiDBLite	consensus disorder prediction	1	35	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo9g00443	Pumo-Chr9	6941896	6945308	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo9g00443	29	374	HSF	AT2G26150	54.310	4.29e-130	375

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Pumo9g00443		HSF_DNA-bind	1.7e-31	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo9g00443	K09419		-	gmx:100778558	608.601