Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00437 ATGTCCAACTTGACATCTGCATCGAGTGAAATAAGTGCTTCTTCTGGAATCAGGAATGAGAACGGTTCTCTCTATGCTCAATATGCCTCTACTTCAATAAGTCAAGAACCACAACCTAAAAAGAAGAGAAGTCTTCCAGGTCACCCAGACCCTGAGGCAGAAGTGATAGCATTGACTCCGCAGACCCTTTTGGCAACAAACAGGTTCGTTTGTGAGATTTGCCACAAAGGGTTTCAGAGAGACCAGAATCTGCAGCTGCATAGAAGAGGGCACAATCTGCCATGGAAGCTGAAGAAGAAGAACAGCAAAGAGGCAGCGAGAAAGAAAGTGTATGTGTGCCCAGAGGCAACGTGCGTTCACCACGACCCTTCAAGGGCCCTTGGGGACCTCACTGGAATCAAGAAACACTTTTTCAGGAAACACGGAGAGAAGAAATGGAAGTGTGAGAAGTGCTCCAAACGCTACGCGGTTCAATCAGATTGGAAAGCCCACTCCAAAATCTGTGGCACCAGAGAATATAAATGCGACTGTGGTACCCTTTTCTCTAGGAGGGACAGCTTTATCACTCACAGAGCCTTCTGTGATGCCTTAGCACTGGAAAGTGGTAGAGCAGTGAACCCTCACCCTCTTCTATCAACTCACCACACCCAATTTCGTAGCCATGGCCTTCAGCTTCAAGCACCATCATCACTTCTGAAAAGAGAACAAGAGTTCAACTTATTAACACCAGAAATTCCATCATGGTTAACATCTCCAACAGCAGTAGAAGAAGCAATGCACACTCAAACCATAAGAACCTTAGATTTCTCATCCACACCACAGTTATTCCCAATACACGTCAACCACTCCTTAGTCCACCATGAATATCAAAACCCTAACCCTACTACTACTATTGCAACAACCACTTTGCTTCCTTCTTTGAGTTCTTTCCCTTATTCCACCACTTGTTCTCCTCACATGTCAGCCACTGCTTTGTTGCAAAAAGCCTCACAAATAGGGGTAACAGTGAGTAGTGCATCACCTTCACAAGCGATGCTAGTTAGACCCCACTTGCTACTGCAGCAGGTTCACGTGCCAGAATGTACAACAACAACAACAACAACAACAGCAACAGGGTATATGGCTTCATCTTCAGCCGTTTCTGGAATGGTTAATTATGCCTTCACGTGA 1170 0.4547 MSNLTSASSEISASSGIRNENGSLYAQYASTSISQEPQPKKKRSLPGHPDPEAEVIALTPQTLLATNRFVCEICHKGFQRDQNLQLHRRGHNLPWKLKKKNSKEAARKKVYVCPEATCVHHDPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALALESGRAVNPHPLLSTHHTQFRSHGLQLQAPSSLLKREQEFNLLTPEIPSWLTSPTAVEEAMHTQTIRTLDFSSTPQLFPIHVNHSLVHHEYQNPNPTTTIATTTLLPSLSSFPYSTTCSPHMSATALLQKASQIGVTVSSASPSQAMLVRPHLLLQQVHVPECTTTTTTTTATGYMASSSAVSGMVNYAFT 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00437 389 Gene3D Classic Zinc Finger 123 199 - -
Pumo9g00437 389 MobiDBLite consensus disorder prediction 28 52 - -
Pumo9g00437 389 FunFam protein indeterminate-domain 12-like 48 117 - -
Pumo9g00437 389 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 355 IPR031140 -
Pumo9g00437 389 SMART c2h2final6 69 91 IPR013087 -
Pumo9g00437 389 SMART c2h2final6 111 141 IPR013087 -
Pumo9g00437 389 SMART c2h2final6 146 166 IPR013087 -
Pumo9g00437 389 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 91 IPR013087 -
Pumo9g00437 389 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Pumo9g00437 389 Gene3D Classic Zinc Finger 49 120 - -
Pumo9g00437 389 FunFam protein indeterminate-domain 5, chloroplastic-like 124 203 - -
Pumo9g00437 389 SUPERFAMILY beta-beta-alpha zinc fingers 68 166 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00437 Pumo-Chr9 6869489 6873736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00437 20 340 IDZ Gene Family AT3G50700 54.046 1.97e-115 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo9g00437 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00437 K25870 - gmx:100783557 575.089