Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00429 ATGACTCCTTATTCTCTGAACCCACCAGGTCCTTCCTTACAAGGTCAAACCCAACTCTTCATTTCTCCTAACAATCAGGACTGCCGTACCTTTTTTAACATATTTGATCCAAACCAAACCATACAAATTGGAGGCTTAAGAGAAAATTATCAACAGGATGACAAGATGGTATTGCATGATGGATCATCAAGCAATTGCAACTCGTCCTTCATTTCAGCTGAGCCAGTTATGGTTGATCCCAGCAGCGCATGTGAGCGTAATTTACCCTCTTACAACAAAATGGAAGAGGAAGAGAGCAAAAATGATCACGGGTCTGGGAAATGGATGTCTTCAAAGATGAGGTTAATGAAAAAAATGATGAGACCGAGTATCAGTCCAACCACTGACAAAGCAATCAATTCAAGCCCAAGATTCCAAAATCATCAAGGGCTCGAAACCAGGTACAGCCAAAGAAGCCCTCGTAACAACGGCAGTGCCACCACTAGGGTTTGTTCGGATTGTAATACAAGCACTACCCCACTTTGGAGGAGTGGCCCTAAGGGTCCTAAGTCTCTTTGCAATGCCTGTGGCATTAGACAGAGGAAGGCAAGAAGGGCAATGGCGGAAGCTGCAAACGGTTTGGTCACTCCCATAAACAATGCAGCATGTGCAAATAAGACCAGAGTTCATAACAAGGAAAAGAAGTCTCGTACGAACCATTTTGCACAGTTCAAGAATAAGTACAAGTCCACAACTACTAGTGCAGGGTCATCTGAGGGAGTGAGGAAGCTTGAATATTTGAAGGACTTCGCCATAAGTTTGAGGAGTAACTCTGATTTTCATCAACAAGTGTTTCCACGGGATGAAGTAGCTGAGGCAGCATTGCTTCTGATGGACTTATCTTATGGTTTTGTCCACTTATAA 903 0.4341 MTPYSLNPPGPSLQGQTQLFISPNNQDCRTFFNIFDPNQTIQIGGLRENYQQDDKMVLHDGSSSNCNSSFISAEPVMVDPSSACERNLPSYNKMEEEESKNDHGSGKWMSSKMRLMKKMMRPSISPTTDKAINSSPRFQNHQGLETRYSQRSPRNNGSATTRVCSDCNTSTTPLWRSGPKGPKSLCNACGIRQRKARRAMAEAANGLVTPINNAACANKTRVHNKEKKSRTNHFAQFKNKYKSTTTSAGSSEGVRKLEYLKDFAISLRSNSDFHQQVFPRDEVAEAALLLMDLSYGFVHL 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00429 300 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 48 299 - -
Pumo9g00429 300 ProSitePatterns GATA-type zinc finger domain. 164 189 IPR000679 GO:0006355|GO:0043565
Pumo9g00429 300 SMART GATA_3 158 209 IPR000679 GO:0006355|GO:0043565
Pumo9g00429 300 Gene3D - 162 200 IPR013088 GO:0006355|GO:0008270
Pumo9g00429 300 MobiDBLite consensus disorder prediction 126 163 - -
Pumo9g00429 300 Pfam GATA zinc finger 164 197 IPR000679 GO:0006355|GO:0043565
Pumo9g00429 300 CDD ZnF_GATA 163 200 IPR000679 GO:0006355|GO:0043565
Pumo9g00429 300 ProSiteProfiles GATA-type zinc finger domain profile. 158 194 IPR000679 GO:0006355|GO:0043565
Pumo9g00429 300 MobiDBLite consensus disorder prediction 124 163 - -
Pumo9g00429 300 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 159 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00429 Pumo-Chr9 6737419 6739885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00429 105 299 C2C2-Gata Transcription Factor Family AT4G26150 39.815 2.31e-30 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pumo9g00429 GATA 2.7e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00429 - - gmx:100780326 469.544