Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00417 ATGAGGATGGGGAGAAAATGCTCATATTGTGGAAATTTGGGTCACAATTCAAGGACTTGCAACAACACTCACAAAGGGGGACTAAAGCTTTTTGGAGTGCAACTTGACCTAATTTGTTGTTGTTCTTCTTCTTCATTATCATCATCATCACCATGCACCTCCTCTTCTTCATCATCAACACGATTTGATATCATGAGAAGAAGTTTGAGCATGGATTACCTTGTATCTACACGAACCTCACAGTCACCCTCCTATAATTTTCTGCTTGGTGCGGATGAAAATTCAGATAAAACGTGTAATGGGTACATAGCCAGTACTGTCGGTGGTGGACTCACTTCAACAACTCATCAAGAAAGGAAAAAAGGTGTGGCATGGAGTGAGGAGGAGCACCGGAAATTTCTTGAAGGACTGGAGAAGCTGGGGAAGGGTGATTGGAGAGGCATTTCTAAAAAATTTGTCATAACAAGAACACCATCTCAAGTGGCTAGTCATGCACAAAAATATTTTTTGCGTCAAACTACCTTCAATAAAAGAAAGCGCCGTCGTAGCCTCTTTGATATGGGAAGAGATGAAACCACTACAATTGAACCCTTTAATACTTGTTTAAAGGCAAGTGGTGAATTTGGGTCCCCATCATCAGGGACTATAATTACTTGTCCTGATCAGTGGGTTTCTTATCATCATTCAGTGCTGAATTGGGCCACCACTTCAACAAACTACACTCATCAAAGTGCTGCCCCAGATCTAGAACTCAAACTTGCTGTTCCCATGCTAACAGAGCCATGCGGCAGAACTTAA 798 0.4185 MRMGRKCSYCGNLGHNSRTCNNTHKGGLKLFGVQLDLICCCSSSSLSSSSPCTSSSSSSTRFDIMRRSLSMDYLVSTRTSQSPSYNFLLGADENSDKTCNGYIASTVGGGLTSTTHQERKKGVAWSEEEHRKFLEGLEKLGKGDWRGISKKFVITRTPSQVASHAQKYFLRQTTFNKRKRRRSLFDMGRDETTTIEPFNTCLKASGEFGSPSSGTIITCPDQWVSYHHSVLNWATTSTNYTHQSAAPDLELKLAVPMLTEPCGRT 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00417 265 FunFam transcription factor MYB1R1 123 174 - -
Pumo9g00417 265 ProSiteProfiles Myb-like domain profile. 117 169 IPR001005 -
Pumo9g00417 265 ProSiteProfiles SANT domain profile. 125 173 IPR017884 -
Pumo9g00417 265 CDD SANT 124 169 IPR001005 -
Pumo9g00417 265 Gene3D - 123 175 - -
Pumo9g00417 265 NCBIfam myb-like DNA-binding domain, SHAQKYF class 120 172 IPR006447 GO:0003677
Pumo9g00417 265 SMART sant 121 171 IPR001005 -
Pumo9g00417 265 SUPERFAMILY Homeodomain-like 118 173 IPR009057 -
Pumo9g00417 265 PANTHER TRANSCRIPTION FACTOR KUA1 5 194 - -
Pumo9g00417 265 Pfam Myb-like DNA-binding domain 124 169 IPR001005 -
Pumo9g00417 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 117 173 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00417 Pumo-Chr9 6592944 6595073 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo9g00417 Myb_DNA-binding 1.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00417 - - gmx:100779256 408.683