Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00414 ATGCACTTTCAAGAGCATTTAGCTGGAGGAAGGCTAATTGCTTCTGCTTCACTTGCTGCTAGAATTGGCCTTCAAGAAAATCTAGAGAGTTCAGCAGCTCTGCCTCCTTCAATGTGTTCATTGGAGGCATTGGGACCATATATCTTCAATAATTGGCAGGACACATCAAACTTTTTGCCTGCAACTTTTGGTGGTCATGCCAATGATGATTTACCAGGTATTGGTAAATGGAATGTGAACAAGTTTGTGAAAGCTCCAGAGGCAGATAGGACTGAGATCCTGGCTTATTCATCCATAGGAAGCCTGGTTCAAAATGGATGGACATCATCAAATGTTGCAAACTTGGCCAATTTTGCCTACAATTCCTCTAATTGTATTAATGAGCTATCATTAAGTCTTGCAAGATCTCCTCAAACTACAGGTCAGTGCTCAGAGATGAGCTGCTCCGATGCGTCACATAACATGAATGGAACAACAAGGTCAGGCTTGGAGCAACCCTCCTGCAGCAGTAAGGAACTGTCTATGAGATTAGGTTCTAACAAACATGTTCAGTTTTCACCAGCTATATTCGGGTCCAGATATCTTGCTGGGATTCAAGAGATACTTGCTCAAATTGCAACATATTCATTTGAAAATGTAGAGCAGATAAATTACTCAGCTGCTGGTGTTAGAGCAGGAGGGAATAAGTCATCTTCAGCTTTCACACCAAAGAGCAGGGTAGCGAATAATCAAAATGCAAATTCCATGTTTGGAGCACATGTAGAAGAATCTCCATTGGAAAGACATGCAACTGAATCAAACAAATCCCAACTTCTCATGCTTCTACAGCTGGTGGACAATGGATATAGTCAGTGTTTGGATGAGATTCATACTGTGATATCTGCATTCCATGCTGCTACTGAGCTGGATCCACACATGCATGCACATTTTGCACTTCAAACGATCTCTCTCTTATACAAGGACTTGAGAGAGAGGATTAGCAATTGTATTCTTGCCATGGGACCGGATTTTAACAGCTTGTGTTCAGAAGAGGAGAAGGAATGGTCTGTTGAAACTTCATTCATTCAAAAGCAATGGGCTCTGCAGCAGTTGAAAAGAAAAGATCACTTGTGGAGGCCCCAAAGGGGCTTGCCAGAAAGATCTGTCTCAGTTCTACGCGCATGGATGTTTCAGAATTTCCTCCATCCGTATCCTAAAGATGCAGAGAAGCATTTACTTGCAGTAAAAAGTGGGTTGACAAGAAGCCAGGTATCCAATTGGTTTATCAATGCGCGTGTTAGGCTATGGAAGCCTATGATTGAAGAAATGTATGCTGAAATGAGTAGAAGAAGAGCTTGTAGAAATGAAGGAATGGAGATCACTCAGAGAGGCAGGATAAGCATGAACAATCAAATGTTGAATATCAATTGA 1410 0.417 MHFQEHLAGGRLIASASLAARIGLQENLESSAALPPSMCSLEALGPYIFNNWQDTSNFLPATFGGHANDDLPGIGKWNVNKFVKAPEADRTEILAYSSIGSLVQNGWTSSNVANLANFAYNSSNCINELSLSLARSPQTTGQCSEMSCSDASHNMNGTTRSGLEQPSCSSKELSMRLGSNKHVQFSPAIFGSRYLAGIQEILAQIATYSFENVEQINYSAAGVRAGGNKSSSAFTPKSRVANNQNANSMFGAHVEESPLERHATESNKSQLLMLLQLVDNGYSQCLDEIHTVISAFHAATELDPHMHAHFALQTISLLYKDLRERISNCILAMGPDFNSLCSEEEKEWSVETSFIQKQWALQQLKRKDHLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMSRRRACRNEGMEITQRGRISMNNQMLNIN 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00414 469 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 149 442 - -
Pumo9g00414 469 SMART HOX_1 371 435 IPR001356 GO:0003677
Pumo9g00414 469 Gene3D - 366 445 - -
Pumo9g00414 469 CDD homeodomain 371 432 IPR001356 GO:0003677
Pumo9g00414 469 ProSiteProfiles 'Homeobox' domain profile. 368 431 IPR001356 GO:0003677
Pumo9g00414 469 SMART prehox3 183 328 IPR006563 -
Pumo9g00414 469 Pfam Homeobox KN domain 388 427 IPR008422 GO:0003677|GO:0006355
Pumo9g00414 469 SUPERFAMILY Homeodomain-like 373 440 IPR009057 -
Pumo9g00414 469 Pfam Associated with HOX 189 327 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00414 Pumo-Chr9 6550265 6552898 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00414 127 444 Homeobox Transcription Factor Family AT4G32980 55.963 1.07e-108 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pumo9g00414 POX 4.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00414 - - gmx:100812648 817.379