Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00395 ATGGACAAATATTATTCAAAGTTTAGACCAAGATGGTCTGCCATAGCCTCTAAACTTGCTGGCAGAACCGACAATGATGTGAAAAACTACTGGAACACGAAACTGAAGAAGAAGATCATGGCAGGAAAAGTTACCCTCAAAACATTGACCGACAATGACACTCTTCCTTCAACTTATTCAACCCCATCACCACTAACCAACCAAAATAATGTCAAGACTACTCAAAATTCACCTTTCCCAGCTTCTTCAGTACAAAATCAAAATTCTCCACCCTCAGTGCTAGTGCCAATCTTAGATGCTAATAATAATGCATTCAGCATTAATGAAAAAAGCATCATTAGTTTTGACCAAGCTCATCATGGGTTGTATAGTCCACAAGTCATGGATGTGGTGTCACAAATTGGTGCAACAAGTTCAAGGATTAACAATAATATTAATAATAATAATCCCATGGTGTCATTGTCTCAAGAAGGTTCAAGCAGCATTTCGGACTCGTCTTCAATTGCAATGAACAACAAGAATGTGTCACAGCCAGAACAACATGCTAGTGATGAATCTATGGAAATGTTGATGGATTTTGGCTTTGGATTTCCCTATGATTTTGCCAATGGTCCTAACTGCCATTATGAGAGAGTTGGTGAATTTGCTCCAAGTTCCTATCCAGAGTGGGTTGAATATTTTAGCTATGCTGACATTAAGCCACATTGA 708 0.3842 MDKYYSKFRPRWSAIASKLAGRTDNDVKNYWNTKLKKKIMAGKVTLKTLTDNDTLPSTYSTPSPLTNQNNVKTTQNSPFPASSVQNQNSPPSVLVPILDANNNAFSINEKSIISFDQAHHGLYSPQVMDVVSQIGATSSRINNNINNNNPMVSLSQEGSSSISDSSSIAMNNKNVSQPEQHASDESMEMLMDFGFGFPYDFANGPNCHYERVGEFAPSSYPEWVEYFSYADIKPH 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00395 235 SUPERFAMILY Homeodomain-like 4 45 IPR009057 -
Pumo9g00395 235 Gene3D - 2 76 - -
Pumo9g00395 235 PANTHER OS09G0431300 PROTEIN 6 182 - -
Pumo9g00395 235 CDD SANT 11 35 IPR001005 -
Pumo9g00395 235 Pfam Myb-like DNA-binding domain 6 33 IPR001005 -
Pumo9g00395 235 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 39 IPR017930 -
Pumo9g00395 235 ProSiteProfiles Myb-like domain profile. 1 35 IPR001005 -
Pumo9g00395 235 MobiDBLite consensus disorder prediction 154 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00395 Pumo-Chr9 6352547 6353380 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00395 5 113 MYB Transcription Factor Family AT4G37780 35.135 2.99e-11 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo9g00395 Myb_DNA-binding 9.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00395 K09422 - gmx:100817747 345.895