Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00390 ATGAGTTTTCATGATACATCAAACACAGGGCTTGGACTTGGTCTTGGTCTTGGTCTTGTTAGCTTCCATGATCAATCAGAGAATTGCATCAAGAGTGATGACCCCTTATTGAGAGAAAGCCATAAGATCAAAAAGGTGGCCATGGAGAATCCATCATCAAAATGTAACAACACAAACACATACCCTTCACTTACATTAGGACCACCAGATGATGATGATGATGATGATGAAGTGAATAATAATAATCAACCAAGTTCAAAGACTGAGTCCTATGAATATTTTCGTCCCCAAGTTTCTTCTCCTAGTGCGGTGTCTTCATTTTCCAACTCTTCTAGCATCAAGAGGGAAAGAGATCAGGTCTTGGGAGAAGAATTTGAGGTAGAGGTAGAGAAAATTCCAACAAGGGTAGGTGATGTTGATGAAGATGGTAACCCCAGAAAGAAACTTAGGCTCACAAAAGAACAAGCCGCAGTCTTGGAGGAAAACTTCAGAGAGCATTCTACTCTCAATCCGAAGCAGAAGCAAGAATTGGCAATGAAGCTGAATCTGCGGACGAGACAAGTAGAGGTGTGGTTTCAGAATAGGAGAGCCAGGACAAAGCTAAAACAAACCGAGTCAGATTGTGAACTATTGAAGAAGTGTTGTGATACTCTAACAGAAGAAAATAAGAGGCTGCAAAAAGAATTGCAAGAACTAAAGTCAATGCAAGCAACGCCAGTGCCCCTTTATATGCAGATTCCAGCTGCAGCCACACTTTCCATATGCCCTTCGTGTGAGAGAATCTGCGGTGGCAACAACAACAACAGTGATGGTAACGGCAACAACAATGGCTCTTCACACACGACAACGTTGCTCATTGGCTCAAAGACACATCATCACCACTTTTACAAAAGTAACAACAACAACTATCCATTCCCCCACTCATCATCCGCAGCATGCTAG 942 0.4236 MSFHDTSNTGLGLGLGLGLVSFHDQSENCIKSDDPLLRESHKIKKVAMENPSSKCNNTNTYPSLTLGPPDDDDDDDEVNNNNQPSSKTESYEYFRPQVSSPSAVSSFSNSSSIKRERDQVLGEEFEVEVEKIPTRVGDVDEDGNPRKKLRLTKEQAAVLEENFREHSTLNPKQKQELAMKLNLRTRQVEVWFQNRRARTKLKQTESDCELLKKCCDTLTEENKRLQKELQELKSMQATPVPLYMQIPAAATLSICPSCERICGGNNNNSDGNGNNNGSSHTTTLLIGSKTHHHHFYKSNNNNYPFPHSSSAAC 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00390 313 ProSiteProfiles 'Homeobox' domain profile. 142 202 IPR001356 GO:0003677
Pumo9g00390 313 SMART HOX_1 144 206 IPR001356 GO:0003677
Pumo9g00390 313 ProSitePatterns 'Homeobox' domain signature. 177 200 IPR017970 GO:0000981|GO:0006355
Pumo9g00390 313 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 12 273 - -
Pumo9g00390 313 SMART halz 202 245 IPR003106 GO:0006355|GO:0043565
Pumo9g00390 313 Gene3D - 138 208 - -
Pumo9g00390 313 MobiDBLite consensus disorder prediction 50 65 - -
Pumo9g00390 313 FunFam Homeobox-leucine zipper protein 18 130 207 - -
Pumo9g00390 313 SUPERFAMILY Homeodomain-like 142 203 IPR009057 -
Pumo9g00390 313 MobiDBLite consensus disorder prediction 47 119 - -
Pumo9g00390 313 CDD homeodomain 145 203 IPR001356 GO:0003677
Pumo9g00390 313 MobiDBLite consensus disorder prediction 81 115 - -
Pumo9g00390 313 Pfam Homeobox associated leucine zipper 202 235 IPR003106 GO:0006355|GO:0043565
Pumo9g00390 313 Coils Coil 201 238 - -
Pumo9g00390 313 Pfam Homeodomain 146 200 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00390 Pumo-Chr9 6209842 6212488 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00390 113 261 Homeobox Transcription Factor Family AT4G37790 62.821 1.17e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo9g00390 Homeodomain 2.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00390 K09338 - gmx:100797650 488.804