Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00379 ATGGTCCCCAAGGTTCACTCCTATGCAAGTGGGGGATTCTCAGAAATGGTTGGTGCTGGCTCTTTTGGCCAACATGGGTCTGGTGATATGGCTAACACAGGGTATCCAACACATTATAATCCGATCAAGGAGGCTCCAATTAATGGTGAACAATCTCAGGTTGAGGACTCAATTCCTGAAGAGGAAGCACCAGGATCTGCTCCTAGTGGGAATAGAAGAAAGAGAGGGCTTGATCATGATTCCACCTTCAGTCCAAATAAGAATGCTGAGGGTGATGCTGTGAAAGATTCTCCCGGGAAGGCCTCTGATGGTCCAAAAGAACATGAAAAGAAACCAAAAGTGGAGCAGAATAATGGTGCAGATGTGCGTGGTAAACAATCAGTGAAGCAAGCTAAAGACAACAATTCTCAAAGTGGAGAAGCTCCCAAAGAAAATTTCATTCACGTGAGAGCTAGAAGAGGTCACGCCACAAATAGCCACAGCCTTGCTGAAAGAGTGAGAAGAGAAAAGATTAGTGAGCGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGCAACAAGATAACTGGCAAAGCTGTAATGCTTGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAGTTTTTGTCCATGAAACTTGCCACAGTGAACCCAGAACTGAACTTTGATGTAGACAGGATCCTATCCAAGGATATTCTCCAATCACGCTTGGGTCATGGAATTGGTGCATATGGTCCTGGTATCAATTCCTCTCACACATTCCCCAATGGAAGTTTCCATGGAACATTGGCTGGCATGCCTAGTACATCATCACAATTCCCTCCTTTGCCCCAGAATGTTTTGGACCACGAGTTCCAAAGCTTCTATGGAGTTGGATACGATTCTAATAGAGCACTTGACAACTTGGGACCCAATGGGCGGTTGAAAACAGAGTTATAG 948 0.4462 MVPKVHSYASGGFSEMVGAGSFGQHGSGDMANTGYPTHYNPIKEAPINGEQSQVEDSIPEEEAPGSAPSGNRRKRGLDHDSTFSPNKNAEGDAVKDSPGKASDGPKEHEKKPKVEQNNGADVRGKQSVKQAKDNNSQSGEAPKENFIHVRARRGHATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVDRILSKDILQSRLGHGIGAYGPGINSSHTFPNGSFHGTLAGMPSTSSQFPPLPQNVLDHEFQSFYGVGYDSNRALDNLGPNGRLKTEL 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00379 315 FunFam Basic helix-loop-helix transcription factor 152 224 - -
Pumo9g00379 315 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 153 223 IPR036638 GO:0046983
Pumo9g00379 315 MobiDBLite consensus disorder prediction 1 145 - -
Pumo9g00379 315 MobiDBLite consensus disorder prediction 93 118 - -
Pumo9g00379 315 SMART finulus 161 211 IPR011598 GO:0046983
Pumo9g00379 315 Pfam Helix-loop-helix DNA-binding domain 158 206 IPR011598 GO:0046983
Pumo9g00379 315 MobiDBLite consensus disorder prediction 120 142 - -
Pumo9g00379 315 Gene3D - 152 226 IPR036638 GO:0046983
Pumo9g00379 315 CDD bHLH_AtBPE_like 145 230 - -
Pumo9g00379 315 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 155 205 IPR011598 GO:0046983
Pumo9g00379 315 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 56 263 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00379 Pumo-Chr9 6008579 6010744 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00379 123 315 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 63.077 2.23e-75 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo9g00379 HLH 2.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00379 - - gmx:100801930 610.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00379 9 6008579 6010744 Pumo9g00379 9 6008579 6010744 ECH