Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00360 ATGATAGAAGAAGGGTGTGCAAAAATGCATTTTCATCAGCCATCTAAGAAGAGAAAAGATGAGAATGCAAAGATTGAAGCTGGTGTGGATCTGAAGGTGATGATTGAGGAGCTGGACTCTATTGATGTGCCTTCTGTGTTTATCTGCCCAATCTCCCTTGAGCCAATGCAAGACCCTGTGACCCTTTGCACTGGCCAAACCTACGACAGATCCAACATCCTCAAATGGTTCTCACTTGGCCACAAAACCTGTCCCACAACAATGCAAGAGCTTTGGGATGATGCTGTCACTCCCAACAGCACCCTTTCTCACTTGATCCTCACTTGGTTCTCTCACAAGTACTTGGCCATGAAGAAGAGGCTCGAGGATGTGCAAGGAAGAGCCTTGGACCTCTTGGACACGCTCAAGAAGGTAAAGGGTCAAGCCAGGGTTCGAGCACTTCAAGATCTAAGGCAACTTGTGGCTTCTCATGTCAATGCAAGGAGGACACTTGAGGAAAATGGTGGGGTTGCTTTGGTTTTCAATTTGTTGGGTCCTTTCACTTCCCATGCTGTTGGGTCTGAAGCTATTGGGATCATAGTGTGTTTGGATTTGAGTTCTGAGGTGAAGGGAAGTCTCATGCATCCGGCTAAGGTGTCATTGTTGGTGGATATTATGAATGAGGGAACCATTGAGACAAAAATGAACTGTGCCAAGTTGATTGAGATGTTGTTGATGGAAGGGAATAATGAGACTCGGTCTCAGATTGAGGTTGTCTCAAGTTTGAGTCTTTTAGTTGGGTTATTGAGGCTAGTGAGGGATAAGAAACACCCAAATGGGGTCTCAATTGGTCTCATATTACTCAAGGCTATAATATGTTCCCATGAATCAGTTAGAAGCTCATTGATAAGCCTAGGAGCAATTCCTCTATTGATTGAGCTTTTGCCAAGTTTGAATAATGAGTGCTTGGAGAAAGCACTCTACATTCTTGAGGTGTTGTCAACCCTTCCAGAGGGAAAGATGGCTTTGAAGGAATGTCCAAATATTATTCCCAATGTGGTGAAGTTGCTGATGAGAGTCTCAGAAAGGTGCACTCAGTTTGCATTGTCAATATTGTGGGCTATTTACAAGCTTGCCCCTGAAGAATGTGCCTCACAGGCTGTGGAGGCAGGGTTGGCAGCAAAGCTTCTGTTGGTGATTCAGAGTGGCTGCAACCCTGTGTTGAAGCAAATGTCTTCTGAGTTTTTGAAAATGTGCAGTCTGAATTACTCTACTAGCTTCTTGGTTTCCAAGTGTATGCTCACCACAACAATACAATGA 1299 0.4442 MIEEGCAKMHFHQPSKKRKDENAKIEAGVDLKVMIEELDSIDVPSVFICPISLEPMQDPVTLCTGQTYDRSNILKWFSLGHKTCPTTMQELWDDAVTPNSTLSHLILTWFSHKYLAMKKRLEDVQGRALDLLDTLKKVKGQARVRALQDLRQLVASHVNARRTLEENGGVALVFNLLGPFTSHAVGSEAIGIIVCLDLSSEVKGSLMHPAKVSLLVDIMNEGTIETKMNCAKLIEMLLMEGNNETRSQIEVVSSLSLLVGLLRLVRDKKHPNGVSIGLILLKAIICSHESVRSSLISLGAIPLLIELLPSLNNECLEKALYILEVLSTLPEGKMALKECPNIIPNVVKLLMRVSERCTQFALSILWAIYKLAPEECASQAVEAGLAAKLLLVIQSGCNPVLKQMSSEFLKMCSLNYSTSFLVSKCMLTTTIQ 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00360 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 124 IPR013083 -
Pumo9g00360 432 SUPERFAMILY ARM repeat 213 413 IPR016024 -
Pumo9g00360 432 Coils Coil 147 167 - -
Pumo9g00360 432 SUPERFAMILY RING/U-box 37 111 - -
Pumo9g00360 432 PANTHER WDSAM1 PROTEIN 39 419 IPR045185 GO:0061630
Pumo9g00360 432 CDD RING-Ubox_PUB 44 94 IPR045210 -
Pumo9g00360 432 SMART Ubox_2 46 109 IPR003613 GO:0004842|GO:0016567
Pumo9g00360 432 Gene3D - 261 425 IPR011989 -
Pumo9g00360 432 ProSiteProfiles U-box domain profile. 42 116 IPR003613 GO:0004842|GO:0016567
Pumo9g00360 432 Gene3D - 127 256 IPR011989 -
Pumo9g00360 432 Pfam U-box domain 43 113 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00360 Pumo-Chr9 5610732 5612474 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00360 29 432 U-box Gene Family AT3G49810 64.356 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00360 - - gmx:100803878 761.14