Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00330 ATGAGCTGCAACGGTTGCCGTGTGCTGCGGAAAGGGTGCAGCGAGACATGCCCTCTGAGGTCGTGCCTGCAGTGGATCGAATCTCCGGAATCACAACGACACGCCACTCTCTTCCTCGCTAAGTTCTTTGGCCGTAACGACCTAATGTCCTTCATTTCTTCCGTCCCCGAAACCAAAAGACCTGCGTTGTTTCAGTCTCTGCTACTTGAAGGGTGCGGGCGAACGGTAAATCCGGTTAACGGCGCCGTGGGACTTCTGTGGAGCGGAAACTGGCACGTGTGCCAGGCCGCTGTGGAGACGGTGCTCGCCGGAGGCATTCTTCGTCCGTTGCCGGAAACATTCGCCGGAAATTCCAACGATACGCGCTATCATTTACGGCCATTAACACTCATGCATGAAATGAGAGAGATGAATGAGAACTCAAGTTTGATTAATAGACCACAAGAATCGGAGATGGCAAGTTACGGCGGCCACAAGAAAAATCAGATTTTAAATTTGTTCATGTGA 507 0.5168 MSCNGCRVLRKGCSETCPLRSCLQWIESPESQRHATLFLAKFFGRNDLMSFISSVPETKRPALFQSLLLEGCGRTVNPVNGAVGLLWSGNWHVCQAAVETVLAGGILRPLPETFAGNSNDTRYHLRPLTLMHEMREMNENSSLINRPQESEMASYGGHKKNQILNLFM 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00330 168 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Pumo9g00330 168 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Pumo9g00330 168 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00330 Pumo-Chr9 5183857 5185315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00330 1 116 AS2 family AT3G49940 78.448 1.70e-64 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo9g00330 LOB 3.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00330 - - gmx:100796966 319.701