LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo9g00307	ATGTCCTCTTCTTCCTATGAACTCATCCTCACCAACTCCCCTGATGGCCCTATCACGGTTTACGAGGCCACCACCGGCACCGTTGTGGCCCGGTTCTCTGGCAGCCGATCCCCATGCCGTGGCCTGACCATGGCGGGTCGACGATTAATCGCGTCCTCACACGTGTCCTCGGACACGGGTGTAGGCTCGATCAACATTTATAATTGGTTTAGTTCTACTAGGTTCCACAACTTCCCTCTACCTGAACCCGTTGCCCCTCTCATTGCTACCCTTGATGGAGCATTTCTCTTTGCTGGTGGCATCTCAGGGAGTATTTTTTCTCTTTTAGCTTCTTCTGGGGATGTGATCAGATCATTTGCTGCACACTCAAGAGCAGTTTCCAGTCTTCTTTTGAGTGATGATGGGTCACTTGTTATTTCAGGGAGTGATGATGGCACAATTGTTGTTGTCCCAACCTTTAAGATTGTCATTAGGGCTTCCTTGGAAGAGGACATGGAAAACTTGATCTTGCACAGATGGAAGGCACATTCTGATTCCGTGACTGCTTTTAAGTCTGTGATGGGTACTTTGGTTTCTTGCTCACTGGATTGCACATGCAAGTTTTGGAATCTGGGAGATAATGGGGTCCTCATAAGGATTGTGGCATTCCCATGTGCCATTTTTGGGGTTGCCTTGGATTCATCAGGGTCAGGATTCTATGCTGCTGGTGCAGATGGGTTGGTTTATAAAGGGGCAGTGAAGGTTGGGAGCAAAAAATCACTAGGTAGAGCTTGTGAATTGAGCACTTGGTCTAAGAGCCATGGTAGGTCAGTTGTGTCATTGGCTTTGGTGAATGAAGGGAGGCATTTGGTGTCTGCTGCAGAAGATGGGAGTGTGTGGATGTGGGATGTTGAGAAAGGAGAAGTCACAGTGGTTTTGGGGAGTGAAATGGTAATGGTAAACATTAGTGATATGATTGTGGTTAAGGGAAGTGGTGAGTTTGGAGTTAGAAAAGGAAATAATATTACAAATGAGGAAGGTAATGGGTCCTTCACTTCTTATGGGTTGTGTGATGAAGAGATGATCAAAACTCTAAACCAAATCACAAAGCTTGGGGGGGTTAGGGATGTGGTGGTACAAGACAAGAAAAAGGCCATTGACATGTTAGAATCTACAATTGAAATGTATGAGAGGCTTTTGACGCTTATCCTTGAGGAAGCCACCAAGGCCATTGAAGAGGGGGAAGTGGAAGAAGATAAAGATGAAGAAGAACAAGGAAAATATGGTCAGAAGGAAGACAGGTAA	1284	0.4587	MSSSSYELILTNSPDGPITVYEATTGTVVARFSGSRSPCRGLTMAGRRLIASSHVSSDTGVGSINIYNWFSSTRFHNFPLPEPVAPLIATLDGAFLFAGGISGSIFSLLASSGDVIRSFAAHSRAVSSLLLSDDGSLVISGSDDGTIVVVPTFKIVIRASLEEDMENLILHRWKAHSDSVTAFKSVMGTLVSCSLDCTCKFWNLGDNGVLIRIVAFPCAIFGVALDSSGSGFYAAGADGLVYKGAVKVGSKKSLGRACELSTWSKSHGRSVVSLALVNEGRHLVSAAEDGSVWMWDVEKGEVTVVLGSEMVMVNISDMIVVKGSGEFGVRKGNNITNEEGNGSFTSYGLCDEEMIKTLNQITKLGGVRDVVVQDKKKAIDMLESTIEMYERLLTLILEEATKAIEEGEVEEDKDEEEQGKYGQKEDR	427

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo9g00307	427	PANTHER	WD-REPEAT PROTEIN 18	7	360	IPR045227	-
	Pumo9g00307	427	Pfam	WD domain, G-beta repeat	114	149	IPR001680	GO:0005515
	Pumo9g00307	427	Pfam	WD domain, G-beta repeat	266	296	IPR001680	GO:0005515
	Pumo9g00307	427	Pfam	WD domain, G-beta repeat	170	203	IPR001680	GO:0005515
	Pumo9g00307	427	ProSitePatterns	Trp-Asp (WD) repeats signature.	283	297	IPR019775	-
	Pumo9g00307	427	ProSiteProfiles	Trp-Asp (WD) repeats profile.	264	305	IPR001680	GO:0005515
	Pumo9g00307	427	SUPERFAMILY	WD40 repeat-like	5	306	IPR036322	GO:0005515
	Pumo9g00307	427	SMART	WD40_4	256	296	IPR001680	GO:0005515
	Pumo9g00307	427	SMART	WD40_4	166	203	IPR001680	GO:0005515
	Pumo9g00307	427	SMART	WD40_4	25	68	IPR001680	GO:0005515
	Pumo9g00307	427	SMART	WD40_4	112	151	IPR001680	GO:0005515
	Pumo9g00307	427	MobiDBLite	consensus disorder prediction	404	427	-	-
	Pumo9g00307	427	Gene3D	-	153	310	IPR015943	GO:0005515
	Pumo9g00307	427	ProSiteProfiles	Trp-Asp (WD) repeats profile.	119	149	IPR001680	GO:0005515
	Pumo9g00307	427	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	264	301	-	-
	Pumo9g00307	427	Coils	Coil	397	417	-	-
	Pumo9g00307	427	Gene3D	-	2	149	IPR015943	GO:0005515
	Pumo9g00307	427	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	119	149	-	-
	Pumo9g00307	427	Coils	Coil	372	392	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo9g00307	Pumo-Chr9	4904228	4905511	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo9g00307	73	299	U-box Gene Family	AT1G04510	26.337	7.60e-07	49.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo9g00307	K14829		-	gmx:100785191	682.559