Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00292 ATGGCTGTGAGCGATGGCAATGCGATTGCGGTGCAGGAAGCAGCCTCTGCGGGGATTCACAGCGTAGAGAAACTCGTGAACATGATTCTGAATCAGCAGAAGGGTAACGACGGTGGTTCAGAATTGGAAGCTGTTGCTGACGTGGCCGTGAACCGCTTCAGAGAGGTTATTTCGCTCCTCGACAAACCAACAAGAACCGGTCACGCTCGTTTCAGAAGAGCCCCTACAACAGTGCCACCTGTCCCTGTTGTTCAGTTGCAGCAAACGGTGGTGGATGATTCCAAACACAAACTGCAACAACAACATAAGACAGAACAAAAACAAACTACCTCTGCTTTTAAGGTTTATTGCCCCCCTCCTCCCCTGCCTCAAAATCAAAATCACCAACAACAACCTTTTGTTTTTCCTCTGCTTAAGAATGAAGCAAATGGTTCTACTACCAACTCCTATGTTTCTACGTTAACTGGGGACACAGAAAATTTGCAACGGTCGTGTCGCTCTTCCGGGTTTCAAATTTCTCACGTGTCACTGCAGGGGGGTTCTTTTATGCGTAAACCACCGCTTTCTTCAAATTCTGCCAAGAGGAAGTGCAATTCAACGGGTTTTCCTCATGTCAAGTGTGGATCGTCCTCTACGCAGTGCCATTGCTCCAAGAAAAGGAAATTGAAGTTGAAGAGAGTGATTAGAGTGCCGGCTATTAGTTCCAAGACTGCTGATATCCCACCCGATGAATATTCGTGGAGAAAATATGGACAGAAACCCATCAAAGGCTCTCCACACCCAAGAGGTTATTACAAGTGCACCAGCGTAAGAGGCTGCCCAGCACGCAAACACGTGGAGCGTGCTGTGGACGATTCCAACATGCTCGTTATAACCTACGAAGGAGAACATAATCACTCGCAAACCGCTTCTGAAGTGGCAAATGTTGTCCTTGAATCATCTTAG 945 0.473 MAVSDGNAIAVQEAASAGIHSVEKLVNMILNQQKGNDGGSELEAVADVAVNRFREVISLLDKPTRTGHARFRRAPTTVPPVPVVQLQQTVVDDSKHKLQQQHKTEQKQTTSAFKVYCPPPPLPQNQNHQQQPFVFPLLKNEANGSTTNSYVSTLTGDTENLQRSCRSSGFQISHVSLQGGSFMRKPPLSSNSAKRKCNSTGFPHVKCGSSSTQCHCSKKRKLKLKRVIRVPAISSKTADIPPDEYSWRKYGQKPIKGSPHPRGYYKCTSVRGCPARKHVERAVDDSNMLVITYEGEHNHSQTASEVANVVLESS 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00292 314 SMART WRKY_cls 241 301 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo9g00292 314 Pfam Plant zinc cluster domain 194 239 IPR018872 -
Pumo9g00292 314 Pfam WRKY DNA -binding domain 243 299 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo9g00292 314 ProSiteProfiles WRKY domain profile. 236 302 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo9g00292 314 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 11 305 IPR044810 GO:0003700
Pumo9g00292 314 FunFam WRKY transcription factor 65 225 302 - -
Pumo9g00292 314 Gene3D WRKY domain 227 302 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo9g00292 314 SUPERFAMILY WRKY DNA-binding domain 237 301 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00292 Pumo-Chr9 4699568 4702122 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00292 10 262 WRKY Transcription Factor Family AT4G24240 45.645 1.24e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo9g00292 WRKY 3.9e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00292 - - gmx:100786245 498.434