Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00282 ATGGAAGACAGGGATCACTGTTGTTCCAACAATTCAACGGTGATTACAAAGAGAAGAACAAGCAGAAGTCCCACATCGGAGAAACCGAAGAAGAACCAACACCGCGAGAAACCGATGAAACCGTACAGAGGGATAAGGATGCGGAAGTGGGGAAAGTGGGTGGCGGAGATCAGAGAACCCAACAAGAGGTCGAGGATTTGGTTGGGTTCTTACACGACACCCGTTGCAGCCGCACGCGCCTACGACACCGCCGTTTTCTATCTCCGAGGTCCCTCCGCGCGCCTTAACTTCCCCGAACTGTTGTTCCAGGACCATGAGGGCAGTGATTCGGTGCAGCACGGCGCAGGAGGGGCCAACATGTCCGCTGATTCCATTCGCCGAAAAGCCACGCAAGTCGGCGCCAGAGTCGACGCTCTCCAAGCCGCGCTTCACCACCACGCGTCTTCGCACTCATCATCAAGTCCCAACTCTCTCAAACCCGACTTGAACGAGTTTCCAAAACTCGAAGACCTTCAAGATTAA 522 0.5441 MEDRDHCCSNNSTVITKRRTSRSPTSEKPKKNQHREKPMKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELLFQDHEGSDSVQHGAGGANMSADSIRRKATQVGARVDALQAALHHHASSHSSSSPNSLKPDLNEFPKLEDLQD 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00282 173 CDD AP2 42 100 IPR001471 GO:0003700|GO:0006355
Pumo9g00282 173 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Pumo9g00282 173 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 23 171 - -
Pumo9g00282 173 MobiDBLite consensus disorder prediction 21 40 - -
Pumo9g00282 173 SMART rav1_2 41 104 IPR001471 GO:0003700|GO:0006355
Pumo9g00282 173 MobiDBLite consensus disorder prediction 142 173 - -
Pumo9g00282 173 SUPERFAMILY DNA-binding domain 41 99 IPR016177 GO:0003677
Pumo9g00282 173 FunFam Ethylene-responsive transcription factor 2 40 99 - -
Pumo9g00282 173 Pfam AP2 domain 42 90 IPR001471 GO:0003700|GO:0006355
Pumo9g00282 173 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Pumo9g00282 173 PRINTS Ethylene responsive element binding protein signature 80 100 IPR001471 GO:0003700|GO:0006355
Pumo9g00282 173 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700|GO:0006355
Pumo9g00282 173 MobiDBLite consensus disorder prediction 145 160 - -
Pumo9g00282 173 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00282 Pumo-Chr9 4584448 4585673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00282 35 170 AP2-EREBP Transcription Factor Family AT2G23340 58.389 3.59e-51 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pumo9g00282 AP2 2.9e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00282 K09286 - gmx:547642 258.455