Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00263 ATGCAAGGTGTTATGGGGTGCAAAACCAACTTCATGGAAATGAGTCAAACATTCAAAAGTTTCAAATTCATGTTTAGGAGGAAGTTTGGATTGGAATACCCTGAAGAAGAAAACTCCCAACCAAGTATCTTTGCTCTTCGGGCTTATGATGCTGTTTGGACCATTGCTCATGCCTTGAAGAAATCACAGGGGAACATTTCTTTATCAGAAAATATTTTACATTGTGATCATGAGGGTCTTAGTGGGAAGATAAGTTTCAAGGACAGAATGTTATTGGAACCACCAACCTTTAAGATTGTCAATGTTATTGGAAAAGGTTACAAAGAGTTAGCATATTGGTCACTGGGGTCTGGTTTAAGTGAGAACCTTGTTGAGCATGTGGTGGTGAACACAACAACTAGTAGGGCTGGTTCTGCTAGAGTGCTTTTAGGTTCCGTGGATTGGCCTGGTGGGTTGAAAACAGTTCCAAAAGGTTGGGTTTACAATAGCACTGAAGGAAGGCCCTTGAAAATTGGGGTTCCAGCTATTGATCCATGTCCACAGTTTGTGAATGTGAGTTATGATAAGAGACTGAATGAAACCCAATTCACGGGTTTCTCTATCAATGTCTTTGAATCAGTTGTGAAACGCCTGCCTTATCACCTGCCTTTTGTTTTTGTGCCATTCTATGGCTCTTATGATCAAATAGTTGAACAAGTGAACAATAAGGACCTTGATGCTGCTGTAGGAGATATTCAAGCGGTGGAACAAAGATATGCATTTGCGGAATTCTCTCACCCATACCTTGAATCTGGTATAGCCATGGTAGTGAAAGTAAAACCAGATAGATCCAAAGAAACTTGGATGTTCATGGACGCTTTCACAAAAGAAATGTGGATCTTGATGGCAGTGATGCACCTGTTCATAGCATTTGTAATCTGGTTCATTGAAGGTGAAAACAATTCAGAGTTGAAGAGTCTCGGGGCCATTCTCTGGTTTTCTGTCACCACATTATTCTTTGTACACAGAGAACCTGTAAAAAGCAATTTGGCCAGAGCTGTGCTAGCACCTTGGTTGTTTGCTATTCTGATAGTGACTCAAAGTTTTACAGCGAGCCTGTCATCCATGATGACAGTGTCTCATCTTGAACCATCTGTGCCGGACATACAAACACTGCTGAGGACAAATGCAATCATAGGCTGCAATAAGAACACTTTTTTGGTCCATTACTTAGTTGATGAGCTCAAATTCCAGCCAGAGAATATCAGGGTATTTGACTCCATCCATGATTTCCCAAGAGCCTTTGAGAACAAAGAAATTGTGGCTTCTTTTACCATTGCCCCTCATGCTGATGTCTTCCTAGCTACTTATTGCAAGGGCTACATCAAAGCAGGACCTACCTTGAAGCTTGGTGGATTAGGCTTTGCATTCCCAAAAGGTTCAAGTTTAGCAATTGACATATCTCGAGCAACCCTAAAAGCCATAGAAAGTGGAGAAGTGCAAAAATTAGAAGAGAAGATGTTGTCCACAACCAACTGTGGATCTACAAACAGCAAAATACAAAATGAACAACTTGGTCCTCAACCTTTCTTTGGCCTATTTGGCATTTGCGGAGCCATTGCTCTCTTTGGTTTGTCAGCAACCATTATTCATTTTGTTAAACGAAATGCAGAGACATTTATGAATTACGTAGCATTATTACAGTTACAAAGAGGATTGCAAATAATCAAACTCCTTGCTGGAAAGTATCTAAACAAGTACACAAGGAGTGCACCACCCCATAACAATGAACTAGCTACATTAAGCTTCGAGTTACCAATTAACTACCACTCGTGA 1815 0.4061 MQGVMGCKTNFMEMSQTFKSFKFMFRRKFGLEYPEEENSQPSIFALRAYDAVWTIAHALKKSQGNISLSENILHCDHEGLSGKISFKDRMLLEPPTFKIVNVIGKGYKELAYWSLGSGLSENLVEHVVVNTTTSRAGSARVLLGSVDWPGGLKTVPKGWVYNSTEGRPLKIGVPAIDPCPQFVNVSYDKRLNETQFTGFSINVFESVVKRLPYHLPFVFVPFYGSYDQIVEQVNNKDLDAAVGDIQAVEQRYAFAEFSHPYLESGIAMVVKVKPDRSKETWMFMDAFTKEMWILMAVMHLFIAFVIWFIEGENNSELKSLGAILWFSVTTLFFVHREPVKSNLARAVLAPWLFAILIVTQSFTASLSSMMTVSHLEPSVPDIQTLLRTNAIIGCNKNTFLVHYLVDELKFQPENIRVFDSIHDFPRAFENKEIVASFTIAPHADVFLATYCKGYIKAGPTLKLGGLGFAFPKGSSLAIDISRATLKAIESGEVQKLEEKMLSTTNCGSTNSKIQNEQLGPQPFFGLFGICGAIALFGLSATIIHFVKRNAETFMNYVALLQLQRGLQIIKLLAGKYLNKYTRSAPPHNNELATLSFELPINYHS 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00263 604 Gene3D - 8 90 - -
Pumo9g00263 604 FunFam Glutamate receptor 280 413 - -
Pumo9g00263 604 Pfam Bacterial extracellular solute-binding proteins, family 3 193 500 IPR001638 -
Pumo9g00263 604 CDD GluR_Plant 167 501 - -
Pumo9g00263 604 SMART GluR_14 170 503 IPR001320 GO:0015276|GO:0016020
Pumo9g00263 604 Pfam Ligand-gated ion channel 501 531 IPR001320 GO:0015276|GO:0016020
Pumo9g00263 604 Gene3D - 163 278 - -
Pumo9g00263 604 SUPERFAMILY Periplasmic binding protein-like II 148 499 - -
Pumo9g00263 604 Gene3D - 279 409 - -
Pumo9g00263 604 Pfam Receptor family ligand binding region 33 103 IPR001828 -
Pumo9g00263 604 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 14 549 IPR015683 -
Pumo9g00263 604 SUPERFAMILY Periplasmic binding protein-like I 2 159 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00263 Pumo-Chr9 3897445 3900972 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00263 42 547 Ion Channels AT2G17260 34.116 3.64e-91 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00263 - - gmx:100781045 1072