Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g00220 ATGAGCCTAATGTTGTCAATAAAATTGCTTTTGTGGTTCCTGTTTTTTTCTTGGTGCCACTTTGGCATCCAATGTGAGGCCAACCAACAAGGGGAGTACCTCTATAAGCTTATTCGATCAAAGAGGGCTCAGAAACACTCTTATGGAGAAGCTTCTTCAATGGCTACAAATGGTGGTGATGGACATTTTTCGAAGGTTTATGTTGTTAAGGAACAATCCGGGTTGATGGAAGGTGACAAAGTGAAGGGTTTGCCGGGACAACCACAAGGGGTGGATTTTGATCAATATGGTGGCTATGTAACGGTGGATGCCAAGGCAGGGAGAGCACTGTTCTACTACCTTGTGGAGTCACCTCACAATGCTTCCAACAAGCCCCTTGTTCTATGGCTAAATGGAGGGCCTGGCTGCTCTTCCTTTGGGTATGGAGCCATGCAAGAACTGGGACCTTTTAGAGTCAACAGTGATGGAAAAACACTTTACAGAAATGAGTATGCATGGAACAACGTGGCAAACGTTATTTTCCTAGAGTCTCCAGCAGGAGTTGGCTTTTCATATTCAAACACTTCTTCTGACTACACTAAAACTGGTGACAAGAGCACAGCCATGGACTCTTACACTTTTCTTCTAAACTGGCTCGAGAGATTTCCACAGTACAAAACTCGAGACTTGTTCATCACTGGAGAAAGCTATGCTGGACATTATGTCCCTCAGCTAGCTGACACTATTCTTACTTATAATAAGCTTACAAATCACACAATCATCAACCTGAAAGGGGTTGCGGTTGGGAATGGCTGGATAGATGATAATATGTGTACAAAGGGAATGTATGAATATTTCTGGACACATGCTCTGAACTCTGATGAAACCCATGAGGGAATTCAAAGGCATTGTGACTTTGAGAGTGGTAACTTAACAAGTGAATGCATCAAATATCAAAACAGAGGGGATACTGAGATTGGAACCATTGACATATATGACATATATGCTCCCCCTTGTGATCCAGCTGCAACAAAAGCTGGTGCCAGTCCTGCCACTAACTCTGACAGCAATTTCGACCCTTGTTCTGAAGATTATACCAATTCCTACTTAAATCTCGCTGAAGTACAAGAGGCTCTTCATGCAAAAGCCTCAAAATGGTCTCCTTGCAGAGGGGTGGGATGGACAGATAGCCCAGCAACAATTCTACCCACTATAAATCGGTTAATATCAAGTGGGATAAACACCTGGATATATAGTGGTGATACAGATGGGCGTGTTCCCATAACATCATCTAGGTATTCAATAAATCGCTTGAAACTTCCAGTGGAGACAACATGGCGTCCATGGTATTCTGGCAATGAGGTTGGAGGATACTTGGTTGGGTACAAAGGGCTCACGCTAATCACTGTAAGAGGAGCTGGGCACATGGTTCCAAGTTACCAACCACAGCGAGCGCTAACCATGATCTCATTTTTCCTTCGTGGAGAACTTCCTCCTGAATTAACCTCTTAG 1491 0.4366 MSLMLSIKLLLWFLFFSWCHFGIQCEANQQGEYLYKLIRSKRAQKHSYGEASSMATNGGDGHFSKVYVVKEQSGLMEGDKVKGLPGQPQGVDFDQYGGYVTVDAKAGRALFYYLVESPHNASNKPLVLWLNGGPGCSSFGYGAMQELGPFRVNSDGKTLYRNEYAWNNVANVIFLESPAGVGFSYSNTSSDYTKTGDKSTAMDSYTFLLNWLERFPQYKTRDLFITGESYAGHYVPQLADTILTYNKLTNHTIINLKGVAVGNGWIDDNMCTKGMYEYFWTHALNSDETHEGIQRHCDFESGNLTSECIKYQNRGDTEIGTIDIYDIYAPPCDPAATKAGASPATNSDSNFDPCSEDYTNSYLNLAEVQEALHAKASKWSPCRGVGWTDSPATILPTINRLISSGINTWIYSGDTDGRVPITSSRYSINRLKLPVETTWRPWYSGNEVGGYLVGYKGLTLITVRGAGHMVPSYQPQRALTMISFFLRGELPPELTS 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g00220 496 FunFam Carboxypeptidase 394 488 - -
Pumo9g00220 496 ProSitePatterns Serine carboxypeptidases, histidine active site. 458 475 IPR033124 GO:0004185
Pumo9g00220 496 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 79 475 IPR001563 GO:0004185|GO:0006508
Pumo9g00220 496 Gene3D alpha/beta hydrolase 76 334 IPR029058 -
Pumo9g00220 496 ProSitePatterns Serine carboxypeptidases, serine active site. 225 232 IPR018202 GO:0004185
Pumo9g00220 496 Gene3D - 394 488 - -
Pumo9g00220 496 Gene3D - 354 385 - -
Pumo9g00220 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 174 IPR001563 GO:0004185|GO:0006508
Pumo9g00220 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 458 471 IPR001563 GO:0004185|GO:0006508
Pumo9g00220 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 175 185 IPR001563 GO:0004185|GO:0006508
Pumo9g00220 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 211 236 IPR001563 GO:0004185|GO:0006508
Pumo9g00220 496 FunFam Carboxypeptidase 75 334 - -
Pumo9g00220 496 SUPERFAMILY alpha/beta-Hydrolases 81 489 IPR029058 -
Pumo9g00220 496 Pfam Serine carboxypeptidase 85 487 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g00220 Pumo-Chr9 3316293 3321645 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g00220 362 489 Calmodulin-binding Proteins AT2G22960 29.323 3.99e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g00220 K16297 - gmx:100818983 965.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00220 9 3316293 3321645 Pumo9g00220 9 3316293 3321645 ECH